Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1457 ATGGCTTCGCAACCCATGTTAGGCCCTAGAACGCAGAGTTTTGAAGCAGAAAAATCGGCGGCGACGCTTTTGATTCGGCATCTCCCCGAAGCCATTCCTCAGGACACCCTGTCTCGCCTCTTCTCCAGCTATGGCGCTTCTTCTGTCCGTCCTTCCACTTCTGGAAGATTGAGGAACTGTGCATTTGTGGATTTCAAGAGTGAAATGTTGGCTTCTCAAGCACTACGCCAATTAAATGGGCTGAGGTTTCTTGGTAAAGTTTTGTTAGTGGAGAGAGCAAATAAGCCAACTGAGGATGATAAACAAAAAAGTGAAGCTCTATTTGGCAAGGATCTTACTAAACCTGCATCTTTAATAAAGGATTTTACCATGGCCAGAGATCTCGGTGAAGGATTGAAGTCAAGCTCCTTACCTGCTAGTGAACCCATCGCTGCAAGACTCGGCATTGATTACCCATTTCCTCCCCACCTTGAGTATGTCCATCCAGATGGAAATATTCTGACCAACATTGTAAATGCTCTAATTGCTGTTCCTCGCTTCTATGTACAGGTGTTGCACTTGATGAATAAAATGAACATTCCAGCTCCATTTCGTATGGCCTTGCCCACCCCACCTATACCACCTCCAGTACCTGCCCCGCCAACACCACCTCCACCCCCTGAAGCTGCAAGACCTAACTTGGAAGACCTATCTAGTGGCGAGTCTGAAATGGAATCATCAGATGAGGAGGTTGATGGCAAAGCCTATTCTCCTGGGCCTCCAAGAGAAACAAAACCTGGTCGAAAGCGTGTCAAACGAGAAGCTATTGCAGGCCCTGGAGTTGATAAAGATGTGGCTCATGAGGCTGTTGGAGTGAAACCTGCCACCTTGGTCCCTAAAGAGATTCCAATGATAAAAAAGAAGAACCCTGTGTTGCAGATCAAAATTGCCCCCAAGGTAATCACTGAACATAAAGATGAATGTAGCATCATGAAAGAATCGGAGGATTCTGAGAAAGAGGATTTTGATCTCAAACATTATGCAACCTTGGAAGAATTAAAAAGTGGAAAGTTGCCTCCAGAGGAAATCTTATCACTTCCAATGTTTAAGAACTATGCGGCTGGGAATCCTGCTCCTGTGTTGTACATAAAGAACTTGGCAAAAGATGTGGTTGTAGATGACTTCTATTTCATATTTGGATCATTATTTGGAAGTGTGGATGCTGCTAAATCTGGTCTTAGTGTGAAGTTGATGCAGGAGGGAAGAATGAGGGGCCAAGCTTTTGTGACATTTCCATCAGTTGAACTTGCTCATCATGCTTTGAATGTAGTGAATGGATACGTTTTCAAAGGCAAGCCAATGATTATCCAGTTTGGTCGGAACCCTGCTGCTGCAAAAGAGAAATAA 1386 0.4452 MASQPMLGPRTQSFEAEKSAATLLIRHLPEAIPQDTLSRLFSSYGASSVRPSTSGRLRNCAFVDFKSEMLASQALRQLNGLRFLGKVLLVERANKPTEDDKQKSEALFGKDLTKPASLIKDFTMARDLGEGLKSSSLPASEPIAARLGIDYPFPPHLEYVHPDGNILTNIVNALIAVPRFYVQVLHLMNKMNIPAPFRMALPTPPIPPPVPAPPTPPPPPEAARPNLEDLSSGESEMESSDEEVDGKAYSPGPPRETKPGRKRVKREAIAGPGVDKDVAHEAVGVKPATLVPKEIPMIKKKNPVLQIKIAPKVITEHKDECSIMKESEDSEKEDFDLKHYATLEELKSGKLPPEEILSLPMFKNYAAGNPAPVLYIKNLAKDVVVDDFYFIFGSLFGSVDAAKSGLSVKLMQEGRMRGQAFVTFPSVELAHHALNVVNGYVFKGKPMIIQFGRNPAAAKEK* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1457 461 CDD RRM2_RBM40_like 373 452 - -
Vvi5g1457 461 SMART rrm1_1 373 450 IPR000504 GO:0003723
Vvi5g1457 461 SMART rrm1_1 22 91 IPR000504 GO:0003723
Vvi5g1457 461 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 95 IPR000504 GO:0003723
Vvi5g1457 461 SUPERFAMILY RNA-binding domain, RBD 21 455 IPR035979 GO:0003676
Vvi5g1457 461 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 88 IPR000504 GO:0003723
Vvi5g1457 461 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 374 446 IPR000504 GO:0003723
Vvi5g1457 461 PANTHER UNCHARACTERIZED 16 458 IPR045164 -
Vvi5g1457 461 FunFam U11/U12 small nuclear ribonucleoprotein 65 kDa protein 367 461 - -
Vvi5g1457 461 MobiDBLite consensus disorder prediction 206 275 - -
Vvi5g1457 461 FunFam U11/U12 small nuclear ribonucleoprotein 65 kDa protein 14 111 - -
Vvi5g1457 461 Gene3D - 367 461 IPR012677 -
Vvi5g1457 461 MobiDBLite consensus disorder prediction 256 275 - -
Vvi5g1457 461 MobiDBLite consensus disorder prediction 206 224 - -
Vvi5g1457 461 Gene3D - 14 112 IPR012677 -
Vvi5g1457 461 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 372 454 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1457 Vvi-Chr5 22439693 22453266 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1457 21 102 Eukaryotic Initiation Factors Gene Family AT1G22760 30.588 5.56e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1457 K13157 - vvi:100247346 830.861