Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1454 ATGCAAATTCCAACAGATAATGAAACTGGAAGAATGGAAACTTCTGCTGGAGGGGAGTTAATTTCATTTGAAGGTGATACAGTTCAAGAACCATATGAGGGCATGCTATTTGAATCAGAAGGAGCTGCCAAAGCATTCTATGATGAATATGCCAGAAGGGTGGGATTTGTGACTAGAGTTTTATCATCCCGTAAATCAGAGCGTGATGGGTCAATTATCTCTCGTGGACTGGGATGTAGAGGGGGTTCTGACAATAAAAAAGCAAGGCACCTTCAAACACAGAAGCGAGACAGACGACGAGAAGGCTGCACAGCTATGATTTTGGTGAAGAGAGAGAAGCCTGGGCAGTGGATAGTTAGGAAATTTGTGAGGGACCATAATCATCCTCTGGTGGTTCAGTTGCAAAAGAGTCGTCCAACTCTAGATGAGAAGGATAAGAAAATCCAGGAACTTACTGCTGAACTGCGGGTTAAGAAACGGTTAACATCAGCATACAGAGAACAGCTTCTAATGTTTGTTAAAGACGTCGAAAACCATAATGAACATTTATCAAAGAAAGTTGAGGTTGTTGTTGACAATTTGAAAGACCTTGAAGCTAAAAGGCAGGAGCTTTTACAGCATAGATAG 627 0.4163 MQIPTDNETGRMETSAGGELISFEGDTVQEPYEGMLFESEGAAKAFYDEYARRVGFVTRVLSSRKSERDGSIISRGLGCRGGSDNKKARHLQTQKRDRRREGCTAMILVKREKPGQWIVRKFVRDHNHPLVVQLQKSRPTLDEKDKKIQELTAELRVKKRLTSAYREQLLMFVKDVENHNEHLSKKVEVVVDNLKDLEAKRQELLQHR* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1454 208 Coils Coil 141 161 - -
Vvi5g1454 208 MobiDBLite consensus disorder prediction 77 97 - -
Vvi5g1454 208 Pfam FAR1 DNA-binding domain 46 131 IPR004330 -
Vvi5g1454 208 Coils Coil 180 207 - -
Vvi5g1454 208 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 23 200 - -
Vvi5g1454 208 MobiDBLite consensus disorder prediction 82 97 - -
Vvi5g1454 208 MobiDBLite consensus disorder prediction 1 23 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1454 Vvi-Chr5 22417000 22418682 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vvi5g1454 FAR1 3.9e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1454 - - vvi:100249265 414.461