Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1451 ATGGAAGGCACCTCAGGTAGACCTGATTTTGTAGAGAGTGATGGGGGTTCAGATGATGAAACCTTTGAAAACTTTGGGGAACATGAAGGCTCAGAAGATGGACTGTTGAGTTGTGATTCACCTGTTCTAAATGAAGAGTTGATTTTGAGGGAACCGACAATGGAAGGTTTGAGTATGCAAAACTTGGAACCATTTAGTGGGATGACTTTTCCATCATTAGATGATGCGAGGAATTTCTATTATGAGTATGCCAAGCGTGTGGGATTCACCATAAGGACAAACCGAATCCGTCACTCACTAAAGAACATGGCGGTAATTGGCAGAGACTTTGTTTGTTCTAGAGAAGGTTTTCGTGCAGCAAAGCACACATCTAGAAAAGATAGGGTACTTCCTCCACGGCCAATTACAAGAGAAGGGTGCAAGGCAATGATAAGGCTGGCAGCAAGGGATGGGAACAAATGGGTGGTCACAAAATTCGTAAGAGAGCACAACCACAAACTAATGACTCATTGTAAATTTTCTGGGGAGCTACCAATTATAAATATTCTCAGTGAGGAAGAGAAGGATAAGAAAATCCAGGATTTATACAATGAATTGCAGCTTGAAAGAGAACGATCTGCAGGATTTCAACAACAGCTAGGCATGATTCTCAAAGATCTTGAGGAACATGCTGACTTCATGTCTGTAAGAGTTGAAGACGTGGTTAACAAAATGAGGGAAATCGAACTTGATGATCAATAA 741 0.413 MEGTSGRPDFVESDGGSDDETFENFGEHEGSEDGLLSCDSPVLNEELILREPTMEGLSMQNLEPFSGMTFPSLDDARNFYYEYAKRVGFTIRTNRIRHSLKNMAVIGRDFVCSREGFRAAKHTSRKDRVLPPRPITREGCKAMIRLAARDGNKWVVTKFVREHNHKLMTHCKFSGELPIINILSEEEKDKKIQDLYNELQLERERSAGFQQQLGMILKDLEEHADFMSVRVEDVVNKMREIELDDQ* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1451 246 Pfam FAR1 DNA-binding domain 78 168 IPR004330 -
Vvi5g1451 246 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 22 245 - -
Vvi5g1451 246 Coils Coil 185 205 - -
Vvi5g1451 246 MobiDBLite consensus disorder prediction 1 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1451 Vvi-Chr5 22394229 22398148 Dispersed/Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vvi5g1451 FAR1 8e-28 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1451 - - vvi:100262716 499.975