Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1449 ATGTTAGCTTTCATCATCATCATCATCATCATCTTCTCTGCTGCTGTTGCTGCTCTCACTTTCAGTGGGTCCCACTCCTCCACCTGGGCCCACCGCCATCTTCTTCGATCTAGGGCTTCAATTTTCCCAACTTCGTTTCTCCACAGGAGCATAATGGAGAATCCATCTTCTTTAGGGTTTGATTCAGATGAAAGCGACCCGGATATGCAAGCTGAAGCCTATGAAGACCATGAAAGAATAGAAGATAAGCTTCCAAATAATTTGGATTTATGTGCAGGTGAAGATGACAAGATAGTAGAACAATCTGTTATAAACAGGGAAGTGTTGGAACCATACATAGGAATGGAGTTCAACTCAAGAGATGAAGCTAGAGAGTTTTATGTTGCCTATGGTAGGCGTACTGGTTTCACTGTACGCATACATCATAATCGCCGTTCACGAGTAAACAATCAGGTTATTGGTCAAGATTTTGTTTGTTCAAAAGAAGGTTTTCGTGCAAAGAAGTATGTATACAGAAAAGATAGAGTTCTTCCTCCACCACCAATCACCCGAGAAGGATGTCAGGCAATGATAAGGCTTGCTCTAAGGGATGGAGCAAAATGGGTTGTCACCAAGTTTGTGAAAGAGCATAGTCATAAATTAATGAGTCCTAGTAAAGTTCCATGGAGGGGATCCGGAAAACATTTAGTCAGTGAGGACGAGAAGGATAAGAGAATCAGAGAACTATCCCTTGAGTTGAACAATGAGAGGCAAAAATGTAAACGACGGTGTGCTGCATATGAAGAACAGTTAAATATGATTTTGAAAGATTTGGAGAAACACACAGAACACATGTCAAGAAAGGTTTCTGATATAGTACAGAGCATAAGAGAAATCGAGGAGGAACAATCAGAAGACTCTGACAAAGAATGGAGTTAG 918 0.4096 MLAFIIIIIIIFSAAVAALTFSGSHSSTWAHRHLLRSRASIFPTSFLHRSIMENPSSLGFDSDESDPDMQAEAYEDHERIEDKLPNNLDLCAGEDDKIVEQSVINREVLEPYIGMEFNSRDEAREFYVAYGRRTGFTVRIHHNRRSRVNNQVIGQDFVCSKEGFRAKKYVYRKDRVLPPPPITREGCQAMIRLALRDGAKWVVTKFVKEHSHKLMSPSKVPWRGSGKHLVSEDEKDKRIRELSLELNNERQKCKRRCAAYEEQLNMILKDLEKHTEHMSRKVSDIVQSIREIEEEQSEDSDKEWS* 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1449 305 Coils Coil 232 263 - -
Vvi5g1449 305 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 64 296 - -
Vvi5g1449 305 Pfam FAR1 DNA-binding domain 125 215 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1449 Vvi-Chr5 22380162 22387038 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vvi5g1449 FAR1 2.1e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1449 - - vvi:100245844 570.852