Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1448 ATGGCAAGCACCTCGGGCCAGGGATTTAATCCAAGCAGGAACTATAGGCGTTGGCTAGATGAGACATTTGATGGCCATGAAACGGCAGAGGATGAGCTATCAGATAGTCTGGATGGAAATGATGATATGGTTCAACAATCTATTGATAATTTACCTGTAAGTTTGGAACCTTTAGAACCATGTGTTGGCATGGAGTTTGAATCAGCAGAGGATGCTAGAGAATTTTATGAGATGTATGGTAGGCGTATGGGATTTACAATCCGGAACAATCGTACTCGTCGTTCACTTAAAGACAACTCCATAATTGGTCGGGAGTTTGTTTGTTCAAAAGAAGGTTTTCGTGTAGAAAAATATGCAAACAGAGAACATAGAATTCTTCCATCGAGGCCGATCACCAGAGAAGGATGTAATGCAATGTTGAGGATTGCTGCAAAGGATGAAGGAAAATGGGCTATATATGGTTTTGTAAAAGAGCATAATCATGAACTGAATCCTAGCAAAATGCCACCACGACGGTCGCATAGAATTGCATTTTGTGAGGATCAAAAGGATCTAAAAATCCGAGAACTGTCCACAGAGCTGCATCGGGAGAGAAAAAAATCTGCTGCTTATCAAGAGCAGCTACAGACGATTTTGAAATACATTGAGGAGCACACTCATCGGTTATCATTAAAAGTTGAAATAGTAGTTAATAATTTGAGGGAACTTGAATCTGAAGAGCAAGACTGTTCTGATTCTGACTAA 744 0.4019 MASTSGQGFNPSRNYRRWLDETFDGHETAEDELSDSLDGNDDMVQQSIDNLPVSLEPLEPCVGMEFESAEDAREFYEMYGRRMGFTIRNNRTRRSLKDNSIIGREFVCSKEGFRVEKYANREHRILPSRPITREGCNAMLRIAAKDEGKWAIYGFVKEHNHELNPSKMPPRRSHRIAFCEDQKDLKIRELSTELHRERKKSAAYQEQLQTILKYIEEHTHRLSLKVEIVVNNLRELESEEQDCSDSD* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1448 247 Coils Coil 187 207 - -
Vvi5g1448 247 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 28 241 - -
Vvi5g1448 247 Pfam FAR1 DNA-binding domain 74 165 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1448 Vvi-Chr5 22371142 22377483 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vvi5g1448 FAR1 1.7e-28 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1448 - - vvi:100250984 491.886