Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1447 ATGGAGACCCTTATAGAAGACAAAGTTGTAACTACAGAAAGTTCTGCCGGAGGGGAATCTGGTTTATGTGAAGTTGACACAAATCAAGAACCATACGAGGGTTTGTTATTTGAATCAGAAGAAGCTGCCAGAGCATTCTATGAAGAATATGCAAGGCGGGTAGGATTTTTAACACGCATCATATCATCACGTAAGTCAGAGCGTGATGGGTCAATTATATCTCGTCGACTTGCATGCAATAAAGAGGGATTTAACCTCAACAGTCAAAAGACAGGGCGTGTTCGAATTCGAAAACGAGAGAGCAAACGAGAAGGTTGCATGGCGATGATTTTGGTGAAGAGGGAGAAGCTTGGGAAATGGGTTGTTACAAAATTTGTGAGGGAGCATAATCATCCATTAGTAATTTCTTCAGGAAATAGTCGGCCAACCCCAGATGAGAAGGATAGGAAGATTCGAGAGCTATCTTCAGAGCTACACCGTGCAAATCAACGATTAGCAGCATGTAGAGAACAGCTACGCACGTTTATGACATACATCGAGGAACACACGCAGTCCCTGTCAAGAACAGTAGAAAACGTTGTTCACAACATCAGGGAAATAGAATCCGAAGATCAATAG 618 0.4256 METLIEDKVVTTESSAGGESGLCEVDTNQEPYEGLLFESEEAARAFYEEYARRVGFLTRIISSRKSERDGSIISRRLACNKEGFNLNSQKTGRVRIRKRESKREGCMAMILVKREKLGKWVVTKFVREHNHPLVISSGNSRPTPDEKDRKIRELSSELHRANQRLAACREQLRTFMTYIEEHTQSLSRTVENVVHNIREIESEDQ* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1447 205 Pfam FAR1 DNA-binding domain 46 134 IPR004330 -
Vvi5g1447 205 Coils Coil 151 171 - -
Vvi5g1447 205 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 19 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1447 Vvi-Chr5 22364669 22367764 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vvi5g1447 FAR1 4.9e-31 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1447 - - vvi:100853873 394.045