LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi5g1445	ATGTCTTCCATAGCCATTTCATATGGTGAGAATGGCCCTGTTTTCTGTGGTCTAAAATCAGATGGGTCTCATCTTGTGACTTGTTATGGATCAAATTCTGCTATAATCTATGGAACCCCTGCCCATTTCCCCTTTATGGGACTAACCGCCGGGGACGGCTTCGTATGTGGGCTTTTAGTGGATTCTAACCAGCCTTACTGCTGGGGAAGTAGTCGTTATGTTCAAATGGGTGTTCCTCAACCCATGATCAAAGGGGCTGAGTACTTAGAAATTAGTGCAGGCGATTACCATTTATGTGGATTGAGAGAACCCTTGACGGGAAGGCTTAGGAACTATTCTCTTGTAGATTGTTGGGGGTATAACATGACTAGAAGCTATAGGTTTGATGGGCAGTTGCAGTCCATCTCTGCTGGGTCAGAGTTCAACTGTGGATTGTTTTCTCAAAATAGAACTGTTTTCTGTTGGGGGGATGAAACTAGTAGCCGGGTAACGAGCTTAATCCCTCAAGAAATGAGGTTCCAGAAGATTGCAGCTGGTGGGTACCATGTTTGTGGCATTTTGGAGGGGGCTAACTCAAGAGTTTTTTGTTGGGGGGGAAGGAGTTTGGACATTGAGGAAGAAATATCTACTGCATACACTGGACAAGGCAATGTGGACTCGGCTCCAAAAGATCCAATGCTTTCAGTTGTGGGGGGGAAATTTCATGCTTGTGGAATCAGGAGCTCGGATCGCGGGGTGACTTGTTGGGGTTTTCGTGTCAAGACAAGTACTCTACCTCCTGATGGCATTAAGGTGTATGAAATTGCAGCTGGGAATTATTTCACTTGTGGAATCCTTGCTGAGAAATCTCTCCTTCCTGTTTGCTGGGGTCTCGGGTTTCCCTCATCGCTCCCTTTAGCTGTATCTCCTGGGCTTTGCACCCCTAGTCCTTGCCTTCCAGGGTTCTATGAATTTAACCATGAAAGCCCGCCTTGCAAGTCTCTAAATTCTCATGTCTGCTTGCCCTGCAGCAGTGCCTGCCTGGATGACATGTACCAGAAAGCTGAATGCACTTTGAAATCTGATCGACAGTGTGAATTTAACTGCTCAGGCTGTTACTCAGCTGAATGCTTCTCGAATTGTTCTTCTTCCTCTTATGCAAATGCCATAACAGGAAGGAAAACTGAAAGGTTTTGGTCACTACAATTGCCAGTAGTTGTAGCAGAGGTTGCTTTTGCTGTGTTCTTGGTCAGCATTGTGTCTTTAACCACAATTCTATATGTTCGCTACAAGTTGAGGAACTGTCGGTGTTCAGACAAAGGATTGAAGTCCAAGAAAGGCAAAGCTAATGGTTCTTCTTTCCAGAATGATAACAGTAAGATCCGGCCTGACTTGGATGAGCTTAAGATCAGAAGAGCTCAGACCTTCACCTATGATGAACTTGAGAGAGCCACAGGCGGGTTCAAGGAAGAATCTCAAGTGGGAAAGGGAAGCTTTTCGTGCGTTTTCAAAGGGGTTTTGAAGGATGGCACAGTGGTTGCAGTTAAAAGGGCTACAATGTCTTCTGACATGAAGAAGAATTCCAAGGAGTTCCATACCGAGCTTGACCTGCTATCGAGATTAAACCATGCTCATTTGCTTAATCTGCTTGGCTATTGTGAAGAAGGTGGGGAAAGGCTTCTGGTTTATGAGTTCATGGCACATGGGTCCTTACACCAGCATCTCCATGGGAAGAACAAGGCCCTAAAAGAGCAATTGGATTGGGTAAGAAGGGTCACCATTGCAGTGCAGGCAGCTCGGGGAATTGAGTATTTGCATGGTTATGCCTGCCCGCCTGTGATTCATCGAGACATCAAGTCATCAAACATCCTCATTGATGAAGAACACAATGCCCGTGTTGCTGATTTCGGTCTTTCATTGTTGGGACCTGCTGATAGTGGCTCCCCACTGGCCGAGCCCCCAGCTGGGACGTTTGGGTACCTTGATCCTGAGTACTATAGACTTCACTACCTTACAACCAAATCCGATGTTTACAGCTTTGGTGTACTACTTCTGGAAATCTTAAGTGGGCGAAAAGCCATTGATATGCAGTTTGATGAGGGGAACATAGTTGAATGGGCTGTTCCTCTGATCAAATCTGGAGACATATCAGCCATTTTGGATCCAGTTCTGAAGCCCCCATCTGACCTCGAAGCGTTGAAAAGGATCGCAACAGTGGCCTACAAATGTGTGAGAATGAGAGGGAAAGAGAGGCCATCAATGGACAAAGTAACAACAGCTCTGGAACGAGCGCTTGCACAGTTGATGGGCAGCCCATGCAACGAGCAACCGATCTTGCCAACTGAGGTGGTACTGGGAAGTAGTAGACTGCACAAGAAATCCTCTCAGAGATCATCAAACCGGTCAGTCTCAGAAACCGATGTTGCAGAAGCAGAAGATCAAAGATTTGAGTTCAGAGCTCCATCATGGATAACTTTCCCCAGTGTTGCTTCCTCCCAGAGAAGGAAGTCCTCAGTTTCTGAAGCAGATGTTGATGGGAAAAACCTGGAAGCAAGAAACTTAGGCAGTGGAGGAAATGGCGGTGACGGGTTGAGAAGCTTGGAGGAGGAGATTGGGCCTGCTTCTCCTCAAGAAAACTTGTTCTTGCAGCACAACTTCTAG	2640	0.464	MSSIAISYGENGPVFCGLKSDGSHLVTCYGSNSAIIYGTPAHFPFMGLTAGDGFVCGLLVDSNQPYCWGSSRYVQMGVPQPMIKGAEYLEISAGDYHLCGLREPLTGRLRNYSLVDCWGYNMTRSYRFDGQLQSISAGSEFNCGLFSQNRTVFCWGDETSSRVTSLIPQEMRFQKIAAGGYHVCGILEGANSRVFCWGGRSLDIEEEISTAYTGQGNVDSAPKDPMLSVVGGKFHACGIRSSDRGVTCWGFRVKTSTLPPDGIKVYEIAAGNYFTCGILAEKSLLPVCWGLGFPSSLPLAVSPGLCTPSPCLPGFYEFNHESPPCKSLNSHVCLPCSSACLDDMYQKAECTLKSDRQCEFNCSGCYSAECFSNCSSSSYANAITGRKTERFWSLQLPVVVAEVAFAVFLVSIVSLTTILYVRYKLRNCRCSDKGLKSKKGKANGSSFQNDNSKIRPDLDELKIRRAQTFTYDELERATGGFKEESQVGKGSFSCVFKGVLKDGTVVAVKRATMSSDMKKNSKEFHTELDLLSRLNHAHLLNLLGYCEEGGERLLVYEFMAHGSLHQHLHGKNKALKEQLDWVRRVTIAVQAARGIEYLHGYACPPVIHRDIKSSNILIDEEHNARVADFGLSLLGPADSGSPLAEPPAGTFGYLDPEYYRLHYLTTKSDVYSFGVLLLEILSGRKAIDMQFDEGNIVEWAVPLIKSGDISAILDPVLKPPSDLEALKRIATVAYKCVRMRGKERPSMDKVTTALERALAQLMGSPCNEQPILPTEVVLGSSRLHKKSSQRSSNRSVSETDVAEAEDQRFEFRAPSWITFPSVASSQRRKSSVSEADVDGKNLEARNLGSGGNGGDGLRSLEEEIGPASPQENLFLQHNF*	880

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi5g1445	879	MobiDBLite	consensus disorder prediction	782	804	-	-
	Vvi5g1445	879	MobiDBLite	consensus disorder prediction	827	879	-	-
	Vvi5g1445	879	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	606	618	IPR008271	GO:0004672\|GO:0006468
	Vvi5g1445	879	ProSitePatterns	Protein kinases ATP-binding region signature.	487	509	IPR017441	GO:0005524
	Vvi5g1445	879	FunFam	Receptor protein kinase CRINKLY4	559	761	-	-
	Vvi5g1445	879	FunFam	Serine/threonine-protein kinase-like protein CR4	1	164	-	-
	Vvi5g1445	879	ProSiteProfiles	TNFR/NGFR family cysteine-rich region domain profile.	310	358	IPR001368	GO:0005515
	Vvi5g1445	879	PANTHER	SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4	1	879	-	-
	Vvi5g1445	879	ProSiteProfiles	Protein kinase domain profile.	481	758	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vvi5g1445	879	MobiDBLite	consensus disorder prediction	782	798	-	-
	Vvi5g1445	879	Gene3D	Transferase(Phosphotransferase) domain 1	559	766	-	-
	Vvi5g1445	879	SUPERFAMILY	Protein kinase-like (PK-like)	461	754	IPR011009	-
	Vvi5g1445	879	Gene3D	-	49	309	IPR009091	-
	Vvi5g1445	879	Pfam	Protein tyrosine and serine/threonine kinase	484	753	IPR001245	GO:0004672\|GO:0006468
	Vvi5g1445	879	Gene3D	Phosphorylase Kinase; domain 1	452	558	-	-
	Vvi5g1445	879	ProSiteProfiles	Regulator of chromosome condensation (RCC1) repeat profile.	63	104	IPR000408	-
	Vvi5g1445	879	FunFam	serine/threonine-protein kinase-like protein CCR1	451	558	-	-
	Vvi5g1445	879	SUPERFAMILY	RCC1/BLIP-II	6	251	IPR009091	-
	Vvi5g1445	879	SMART	serkin_6	481	758	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi5g1445	Vvi-Chr5	22333062	22335701	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi5g1445	1	879	Receptor kinase-like Gene Family	AT3G59420	70.655	0.0	1263

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_CR4L	Vvi5g1445		PK_Tyr_Ser-Thr	5.2e-44	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi5g1445	-		-	vvi:100266430	1764.2