Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1443 ATGTGCTTCCGATGTCATGGTGGATTTGGTCATGTTGTGTTGTGCAAAAATAAACTAGATGGAAGACAGTATGCGGTGAAGAAGATTCGTCTCAAAGACAAAAGTCCACCTGTTTATGACCGGATATTGAGGGAAGTGGCCACGCTTTCCCGTTTGCAGCATCAACATGTTGTCCGTTACTATCAGGCATGGTTTGAAACAGGAGTTTCTGGTTCTTTTGGGGACACAACTTGGGGCTCAATGACACCAGCAAGCTCAAGTTTCAGCTACAAGGGTGCAAGCTCAGCAGATGTAAATGTGCATGAGAATAAGCTTGAATCAACATATTTGTATATACAGATGGAATACTGTCCTAGGACTCTCCGCCAGATGTTTGAATCATATAGCCATTTTGACAAAGAATTGGCGTGGCATTTATTTCGCCAAATTGTTGAAGGCTTGGTACATATACATGGACAAGGAATCATCCATCGGGACTTAACACCAAATAACATCTTCTTTGATGCTCGCAATGATATTAAAATTGGAGACTTTGGTCTTGATACTTCTCCTCCCTCAGCTGGGCTTTGTATGATCTACTCTCTATTCCCTGAAGAATGCCTTCTCCGAACTCTACGTGCAGCAGAAATCCAAACACTTAGTGTCCGTTTGCATATTGTAGGTGTGCCTAGTGTTCTGCTTGACAATATTTATCTCCCATCCCAGTCTCGTTTGAATTCAAATAAGTCAGTAGATGGGTTGGACGGGATTGAAGAAGTAGGAGGAGATTGGGCCGGAGAAGATGAGGCCATCGCCAATGTGGGCTGTCGGGCCTATGAGAGGAAGGCCCAGTCACTGTCAAAGTCTGGTCCAAGAGTAGCTATAATGGGCTGCAAGCTTAAAGGCCCGCTGGGGTTGGGCCTAAGCCTAGAAGAGTTTATCCCTGTTGAGACTGTGGCATCGTTACGCAAGGAAGAAGACTCATCTGCAAACGAAAAGAGGAAAACAACTCCTGGACTCCTTGAGGTTCAGTTGAGCAGGGAATCCGGTGTTGCAGCGAGTCCATTTCGCTCAGAAAGATCAAGGCGGACAGCGAAGAGGACCCAAAGGCAGAGGCTTCAGGTGCCGAATCTCAGGCGAAAAGAAGATTAA 1131 0.4571 MCFRCHGGFGHVVLCKNKLDGRQYAVKKIRLKDKSPPVYDRILREVATLSRLQHQHVVRYYQAWFETGVSGSFGDTTWGSMTPASSSFSYKGASSADVNVHENKLESTYLYIQMEYCPRTLRQMFESYSHFDKELAWHLFRQIVEGLVHIHGQGIIHRDLTPNNIFFDARNDIKIGDFGLDTSPPSAGLCMIYSLFPEECLLRTLRAAEIQTLSVRLHIVGVPSVLLDNIYLPSQSRLNSNKSVDGLDGIEEVGGDWAGEDEAIANVGCRAYERKAQSLSKSGPRVAIMGCKLKGPLGLGLSLEEFIPVETVASLRKEEDSSANEKRKTTPGLLEVQLSRESGVAASPFRSERSRRTAKRTQRQRLQVPNLRRKED* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1443 376 ProSitePatterns Tyrosine protein kinases specific active-site signature. 155 167 IPR008266 GO:0004672|GO:0006468
Vvi5g1443 376 SUPERFAMILY Protein kinase-like (PK-like) 6 182 IPR011009 -
Vvi5g1443 376 Gene3D Transferase(Phosphotransferase) domain 1 97 193 - -
Vvi5g1443 376 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 6 183 - -
Vvi5g1443 376 Gene3D Phosphorylase Kinase; domain 1 4 82 - -
Vvi5g1443 376 Pfam Protein kinase domain 6 180 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g1443 376 ProSiteProfiles Protein kinase domain profile. 1 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g1443 376 MobiDBLite consensus disorder prediction 315 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1443 Vvi-Chr5 22270683 22279254 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1443 7 180 MAP Kinase Kinase Kinase AT1G63700 25.843 5.71e-14 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_GCN2 Vvi5g1443 Pkinase 1.9e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1443 K16196 - vvi:100249259 363.999