Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1435 ATGTATTCAAAACGGTCTGGTCAAGGGGATGGATCTGCTTCAGGACCAGTACGCACAAGTGATAGGCTCAGGAGAAGGCCAAAGATGTATGGTCGCTCATACTTGTATTATAGTCCAACCATTATACGCGGCAAGAAAAGCAAAACTAAGACAAGAACAGCAGCTTCTCAGATTGCCAAGATGTTGCGTCCTGGGAATCGGCCAATGCGGAACTCAAATAGTAATTCAGTTGCGACCAACCTTCGACGTTCTACCAGAAAGAGGAGGATTTCTGTAAATCTTGAAGGTTATACAGATAGTTCTGGGTCAGAGGAAGATGATGACTTGATGAGACCCAAGTATCGACCTTCTAGAAACCGCATTGACAATAGTGCAAGTCAAGATGAGTTATCATCTCCTAAACATAAAAAAATCCTTGATGCTAGACCATTGCCGAGGCGTGAAGGACTTCGTCCCCGTCGCTCAAAAGCAGTTGCAAGAGAACAGTTGAATCTAGAATCTGATGATGAACAAGGTACATCTGAAGAGAAGGTTGGCCATGATGAAACAGAAAATGGGAATGAGGTTGAAGATAATGATGCTGATGCTGATGCTGATGATGGTGAGGATGAAGATGAGGGCGATGGTGACGGTGATGGCGAGGGTGAGGATGATGGAGAGGAAGATGGTGATGATGAAGAGGGTGAAGAAGAACAGGAGGAAGGAAGGAGGCGGTATGATCTTCGTAATCGTGCTGATGTCCGCAGGCTTTCTCTTGAAGAAGGTAAGCAAAGACCAAGATCTCCTCGAAGAGTGTTACATCAAGGGATGGGTACTAAGGTCAGCAGAGATGCAAGGAAGGGTGGATCTCGAGGTCACAAGCGTCATCGCCTAGCAAGAGCCGAAGATTCTGATGACTCTCTTCTTGTGGATGAGCTAGATCAAGGTCCTGCTATTCCTTGGGGGCGTGGTGGGAGCAGATCTGCACCACCTTGGCTTTTTGGCGGACTAGATGTGCCTGGGACATCAGCGTGGGGCTTGAATGTTGCTGCTTCTGGTTGGGGACATCAGAGTGATGCTTTTGCTACCTTGACTTCTGGGATCCAAACAGCTGGACCAAGCTCCAAGGGAGGGGCTGATATTCAACCTTTACAGGTTGATGAGAGTGTAAGTTTTGATGACATAGGTGGGCTTTCTGAATATATTGATGCATTGAAAGAAATGGTTTTCTTCCCCTTGCTATATCCAGATTTCTTTGCTAGTTACCACATCACCCCTCCCAGGGGGGTCTTGTTATGTGGTCCCCCTGGCACTGGGAAAACACTTATTGCAAGAGCATTGGCTTGTGCTGCTTCAAAGGCTGGCCAGAAAGTCAGTTTTTACATGCGGAAGGGTGCTGATGTGCTTAGCAAATGGGTAGGTGAGGCTGAAAGACAATTGAAACTACTTTTTGAAGAAGCTCAAAGGAATCAACCATCTATTATCTTCTTTGATGAAATTGATGGACTTGCCCCTGTTCGCTCTAGCAAACAAGAGCAAATTCACAATTCTATCGTGTCAACTTTGCTTGCATTAATGGATGGTCTTGATTCTCGTGGACAAGTCGTTCTGATTGGAGCAACCAACCGGATTGATGCCATTGATGGAGCCTTACGCCGCCCTGGTCGGTTTGATCGTGAATTCAACTTTCCTCTGCCTGGTTGTGAGGCACGTGCTGAAATATTAGAGATTCATACACGCAAATGGAAGCAGCCTCCTTCAAAGGAACTAAAATTGGAGCTTGCTGCCAGTTGTGTAGGATATTGTGGTGCTGATTTAAAAGCTCTTTGCACTGAAGCTGCAATTCGTGCTTTTCGTGAAAAATATCCTCAGGTTTACACTAGTGATGACAAATTTGTGATAGATGTTGATTCAGTAAAGGTCGAAAAGTATCATTTTGTAGAAGCCATGTCAACAATTACCCCTGCTGCACACAGGGGCTCTATTGTTCACTCTCGACCATTGTCGTTAGTTGTTGCACCATGTCTACAAAGGCATCTCCAGAAGGCTATGAATTATATATCAGATATTTTTCCTGCTCTTGCAATTTCCTCAGAATTAACGAAGCTTTCTATGCTGTCCTATGGTTCTGCAATTCCTCTTGTGTATAGACCTCGGTTTTTGTTATATGGCAGTGAAGATGTGGGGCTGGATCATCTTGGGCCAGCTATTTTACATGAGCTGGAGAAATTTCCTGTTCATTCTCTAGGATTTCCAGCTCTTCTTTCAGATCCTAGTGCAAAGACACCAGAAGAGGCATTGGTACATATATTTGGTGAAGCAAGAAGAACAACACCATCCATACTGTATTTACCTCAATTCCATCTTTGGTGGGAGAATGCACATGAGCAGCTTAAGGCTGTTCTGAGAACCCTATTGGAAGAATTGCCTTCTGACTTTCCCATATTATTACTAGGAACATCCTCAACACCCCCATCTGAATTGGAGACTATGGGTGCAACTTCAGTCTTTTCTCACCGTAATATCTATGAAGTGGGAAAACCATCAATTGAAGACAGAAATCTGTTTTTTGAGCGTTTGGTTGAAGCTGCTTTGTCAGTGTCATCAGAGGGATCAAAGGGAAAATCCCAAGAACAGGCCCTTCCTGAACTCCCCAAAGCACCAAAAGTAGCAAGTGGCCCAAAAGTCTCCGAGTTAAAAGCCAAGGTAGAAGCTGAACAACATGCACTGCGGCGACTGCGAATGTGTCTTAGAGATGTTTGCAACCGGATTTTGTATGATAAAAGGTTCACTGTCTTCCATTATCCGGTCATGGATGAGGATGCACCAAACTATCGCTCAATCATTCAGAATCCCATGGACATGGCTACTCTTCTGCAGCGTGTGGACTGTGGGCAGTATATTACATGTTCAGTATTCCTGCAAGATATTGATCTTATTGTTAACAATGCGAAGGCTTATAATGGAGACGATTACAATGGAGCTAGGATCGTCAGTAGAGCCTACGAGCTTCGAGATGCAGTTTATGGAATGCTGTCACAGATGGACCCTGCACTGGTTGCATTCTGTGAAAAGATTGCTGCCCAAGGGGGTCCAGCCCATATGCCAGACGAGCTTGGGGGCTCAGTTTTCACACCCACTCCTGTTGTTCAGATGGCAACTGTTACTAGAGCAAGTGCTCGACTTCGTAATGTGCAGCCAGAGGTTAATCTGGACCAAAGCTATGAAGCATTGAAAAGACCAAAAAAGAATGTTGATGCTGCACCTTCAGTGTCAACAGCAGAAGACAAGCCACGGCAACAGGAAGCTGCGCCATCAAAGTCATCACAAGAAAATGAGGCAAATGAGGCAAATGACGCAAGTCCTGAACAGCCAGAGTGCTCTCTTGCTGATAACCATAGACCTGAAACCTCTCAAGAAGCATCAGGTCATACCAGTGCAAGTGGATCCCAAGAAGATGTTATAATGTCAGATGTAGAGATTTTGAGCCAAATGGAATCGGTTAAGCTGCTTTTTGTGGAGCGCACTGAAAACTATGGTATTCCACAGCTGGAAAGGCTTTACACGCGCATTATGAAGGGTGTGTTCGAAGCCAAAGATGGTGGGGTTGGGGAAGATCCAAAGCCTTCAATTTTGAAGTTTTTGTTGAAGTTTGCCAATGATGAGGCAAACTTCTGA 3657 0.4495 MYSKRSGQGDGSASGPVRTSDRLRRRPKMYGRSYLYYSPTIIRGKKSKTKTRTAASQIAKMLRPGNRPMRNSNSNSVATNLRRSTRKRRISVNLEGYTDSSGSEEDDDLMRPKYRPSRNRIDNSASQDELSSPKHKKILDARPLPRREGLRPRRSKAVAREQLNLESDDEQGTSEEKVGHDETENGNEVEDNDADADADDGEDEDEGDGDGDGEGEDDGEEDGDDEEGEEEQEEGRRRYDLRNRADVRRLSLEEGKQRPRSPRRVLHQGMGTKVSRDARKGGSRGHKRHRLARAEDSDDSLLVDELDQGPAIPWGRGGSRSAPPWLFGGLDVPGTSAWGLNVAASGWGHQSDAFATLTSGIQTAGPSSKGGADIQPLQVDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKQEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRIDAIDGALRRPGRFDREFNFPLPGCEARAEILEIHTRKWKQPPSKELKLELAASCVGYCGADLKALCTEAAIRAFREKYPQVYTSDDKFVIDVDSVKVEKYHFVEAMSTITPAAHRGSIVHSRPLSLVVAPCLQRHLQKAMNYISDIFPALAISSELTKLSMLSYGSAIPLVYRPRFLLYGSEDVGLDHLGPAILHELEKFPVHSLGFPALLSDPSAKTPEEALVHIFGEARRTTPSILYLPQFHLWWENAHEQLKAVLRTLLEELPSDFPILLLGTSSTPPSELETMGATSVFSHRNIYEVGKPSIEDRNLFFERLVEAALSVSSEGSKGKSQEQALPELPKAPKVASGPKVSELKAKVEAEQHALRRLRMCLRDVCNRILYDKRFTVFHYPVMDEDAPNYRSIIQNPMDMATLLQRVDCGQYITCSVFLQDIDLIVNNAKAYNGDDYNGARIVSRAYELRDAVYGMLSQMDPALVAFCEKIAAQGGPAHMPDELGGSVFTPTPVVQMATVTRASARLRNVQPEVNLDQSYEALKRPKKNVDAAPSVSTAEDKPRQQEAAPSKSSQENEANEANDASPEQPECSLADNHRPETSQEASGHTSASGSQEDVIMSDVEILSQMESVKLLFVERTENYGIPQLERLYTRIMKGVFEAKDGGVGEDPKPSILKFLLKFANDEANF* 1219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1435 1218 FunFam ATPase family AAA domain-containing protein 895 1023 - -
Vvi5g1435 1218 Gene3D - 559 644 - -
Vvi5g1435 1218 MobiDBLite consensus disorder prediction 1 15 - -
Vvi5g1435 1218 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 381 647 IPR027417 -
Vvi5g1435 1218 SUPERFAMILY Bromodomain 901 1013 IPR036427 GO:0005515
Vvi5g1435 1218 FunFam ATPase family, AAA domain-containing 2 381 564 - -
Vvi5g1435 1218 CDD Bromo_AAA 903 1013 - -
Vvi5g1435 1218 MobiDBLite consensus disorder prediction 1087 1115 - -
Vvi5g1435 1218 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 707 922 IPR027417 -
Vvi5g1435 1218 SMART bromo_6 903 1010 IPR001487 GO:0005515
Vvi5g1435 1218 Pfam AAA+ lid domain 586 622 IPR041569 -
Vvi5g1435 1218 MobiDBLite consensus disorder prediction 67 81 - -
Vvi5g1435 1218 MobiDBLite consensus disorder prediction 129 185 - -
Vvi5g1435 1218 MobiDBLite consensus disorder prediction 232 261 - -
Vvi5g1435 1218 MobiDBLite consensus disorder prediction 186 231 - -
Vvi5g1435 1218 Gene3D - 895 1023 IPR036427 GO:0005515
Vvi5g1435 1218 MobiDBLite consensus disorder prediction 104 118 - -
Vvi5g1435 1218 MobiDBLite consensus disorder prediction 61 297 - -
Vvi5g1435 1218 ProSiteProfiles Bromodomain profile. 926 988 IPR001487 GO:0005515
Vvi5g1435 1218 MobiDBLite consensus disorder prediction 865 888 - -
Vvi5g1435 1218 FunFam ATPase family AAA domain-containing protein 2B 559 644 - -
Vvi5g1435 1218 MobiDBLite consensus disorder prediction 1 32 - -
Vvi5g1435 1218 Gene3D - 381 652 IPR027417 -
Vvi5g1435 1218 MobiDBLite consensus disorder prediction 1124 1145 - -
Vvi5g1435 1218 PANTHER AAA DOMAIN-CONTAINING 1051 1194 IPR045199 -
Vvi5g1435 1218 MobiDBLite consensus disorder prediction 1066 1145 - -
Vvi5g1435 1218 Pfam Bromodomain 917 984 IPR001487 GO:0005515
Vvi5g1435 1218 Pfam ATPase family associated with various cellular activities (AAA) 423 558 IPR003959 GO:0005524|GO:0016887
Vvi5g1435 1218 PRINTS Bromodomain signature 951 969 IPR001487 GO:0005515
Vvi5g1435 1218 PRINTS Bromodomain signature 935 951 IPR001487 GO:0005515
Vvi5g1435 1218 PRINTS Bromodomain signature 969 988 IPR001487 GO:0005515
Vvi5g1435 1218 ProSitePatterns AAA-protein family signature. 528 546 IPR003960 GO:0005524|GO:0016887
Vvi5g1435 1218 SMART AAA_5 419 560 IPR003593 GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1435 Vvi-Chr5 22132337 22141684 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1435 369 623 Calmodulin-binding Proteins AT3G56690 36.680 1.05e-40 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1435 K22531 - vvi:100242365 2281.14