Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1426 ATGGGAGGCTGCATTTCCATGCCTGCTAAGGCAGGCCAGAAGAAGAAAGCCAAGGCCAAAAAGATCATCCCTGAATCCGGCGACGACGTGTTTCGGAAATCGGTGACGATCCGGCCGATATCGGTGTTGAAGGAGCCGAGCGGCAAGGACATTTACAAGACGTACAGGCTGGGGAAGGAGCTGGGGCGGGGGGAGTTTGGGGTAACCCACCAGTGTTTCGACCTGGAGACCGGGGAAATCTTCGCCTGCAAGACGATTTCGAAGAGCAAGCTGACGACCGAGATCGATATTCAGGATGTGAGGAGGGAGGTGGAGATTATGAAGCATTTGCCCAAGCACCCGAATATCGTAAGGTTGAAGGAGGCGTATGAGGACAAGGATAATGTACATTTGGTCATGGAACTCTGCGAGGGAGGCGAGCTCTTCGATAGGATTGTCGCCCGCGGCCACTACACAGAGCGGGCCGCCGCAGATGTCACCAGAAGTATTGTCGAGATCCTTCAGATATGCCATCAACATGGAGTGATGCATCGAGACCTAAAGCCCGAGAATTTCTTGTTTGCAGATGCAAGTGAAGCTTCACCATTGAAGGCAATTGATTTTGGGCTATCCATATTCTTTAAGCCGGGCCAGCGGTTCAATGAAATTGTTGGAAGCCCCTACTACATGGCCCCAGAAGTCCTGAGACGACACTATGGACCAGAAGTCGATGTTTGGAGCGCAGGCGTTATTCTTTATATCCTACTCTGTGGAGTTCCTCCCTTCTGGGCAGAAACCGAAGAAGGGATTGCACAGGCAATTGTGAAGTCTGTTGTAGACTTTGAGAGGGATCCTTGGCCTCATGTTTCTGAGGATGCCAAGGACCTAGTGAGGAGTATGCTTGATCCCAACCCTTATAACCGCTTGACTGTTGAAGAAGTCCTTGCCCATCCATGGATCAAAAATGCCACCAGCATCCCTAATGTGTCCCTTGGAGAAAATGTGAGGACGAGGATCAAGCAATTCTCATTGATGAACAAGTTCAAGAAGAGGGTTCTCAGAGTGGTAGCAGACAACCTACCAAATGAGCAGCGAGATGGAATCAGACAGATATTCCACATGATGGACACTGACAAAAATGGAAACTTGAGCTTTGAAGAGCTCAAAGACGGACTCCACAAGATTGGACATCCAGTTGCCGACCCTGATGTGAAGATGTTGATTGAAGCTGCTGATATGGATGGAACCGGGACACTGAACTGTGATGAGTTTGTAACAATTTCTGTGCACCTGAGAAAGATCAGCAGCGATGAAAATCTGAGCGAAGCTTTTAGGGCTTTCGACAAGAACGACAGTGGGTACATTGAGTTTGAAGAGCTCAGAGAGGCCTTAAGAGAGGATAACCTTGGCCCCAACAATGAGCAGGTGATCCAAGACATCATTTTCGACGTTGATTTGGACAAGGATGGTCGGATCAGTTATGATGAGTTCAAGGCGATGATGAAGACGGGCATGGACTGGAAGATGTCGTCGCGCCAGTACTCAAGAGCAATGCTAAATGCCCTTAGCATGAGAATCTTCAAAGACAAATCTATGCCACTGCAAAACAAATCTATGCAGCTGGAAAACAGATCTATGCTGCTGAAAAACAGATCTATGCGACTGCAAAATCAAGTGTTTGTTTAG 1665 0.4841 MGGCISMPAKAGQKKKAKAKKIIPESGDDVFRKSVTIRPISVLKEPSGKDIYKTYRLGKELGRGEFGVTHQCFDLETGEIFACKTISKSKLTTEIDIQDVRREVEIMKHLPKHPNIVRLKEAYEDKDNVHLVMELCEGGELFDRIVARGHYTERAAADVTRSIVEILQICHQHGVMHRDLKPENFLFADASEASPLKAIDFGLSIFFKPGQRFNEIVGSPYYMAPEVLRRHYGPEVDVWSAGVILYILLCGVPPFWAETEEGIAQAIVKSVVDFERDPWPHVSEDAKDLVRSMLDPNPYNRLTVEEVLAHPWIKNATSIPNVSLGENVRTRIKQFSLMNKFKKRVLRVVADNLPNEQRDGIRQIFHMMDTDKNGNLSFEELKDGLHKIGHPVADPDVKMLIEAADMDGTGTLNCDEFVTISVHLRKISSDENLSEAFRAFDKNDSGYIEFEELREALREDNLGPNNEQVIQDIIFDVDLDKDGRISYDEFKAMMKTGMDWKMSSRQYSRAMLNALSMRIFKDKSMPLQNKSMQLENRSMLLKNRSMRLQNQVFV* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1426 554 ProSitePatterns Protein kinases ATP-binding region signature. 61 84 IPR017441 GO:0005524
Vvi5g1426 554 SUPERFAMILY EF-hand 342 499 IPR011992 -
Vvi5g1426 554 Gene3D Transferase(Phosphotransferase) domain 1 141 321 - -
Vvi5g1426 554 SMART serkin_6 55 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g1426 554 ProSitePatterns EF-hand calcium-binding domain. 405 417 IPR018247 -
Vvi5g1426 554 ProSiteProfiles EF-hand calcium-binding domain profile. 465 500 IPR002048 GO:0005509
Vvi5g1426 554 Gene3D Phosphorylase Kinase; domain 1 57 140 - -
Vvi5g1426 554 FunFam Calcium-dependent protein kinase 1 57 140 - -
Vvi5g1426 554 ProSitePatterns Serine/Threonine protein kinases active-site signature. 175 187 IPR008271 GO:0004672|GO:0006468
Vvi5g1426 554 FunFam Calcium-dependent protein kinase 7 322 498 - -
Vvi5g1426 554 ProSiteProfiles EF-hand calcium-binding domain profile. 428 463 IPR002048 GO:0005509
Vvi5g1426 554 Gene3D - 322 497 - -
Vvi5g1426 554 SMART efh_1 360 388 IPR002048 GO:0005509
Vvi5g1426 554 SMART efh_1 469 497 IPR002048 GO:0005509
Vvi5g1426 554 SMART efh_1 432 460 IPR002048 GO:0005509
Vvi5g1426 554 SMART efh_1 396 424 IPR002048 GO:0005509
Vvi5g1426 554 ProSitePatterns EF-hand calcium-binding domain. 369 381 IPR018247 -
Vvi5g1426 554 ProSiteProfiles EF-hand calcium-binding domain profile. 356 391 IPR002048 GO:0005509
Vvi5g1426 554 CDD STKc_CAMK 55 312 - -
Vvi5g1426 554 FunFam calcium-dependent protein kinase 13 141 321 - -
Vvi5g1426 554 Pfam EF hand 361 387 IPR002048 GO:0005509
Vvi5g1426 554 SUPERFAMILY Protein kinase-like (PK-like) 52 314 IPR011009 -
Vvi5g1426 554 ProSiteProfiles Protein kinase domain profile. 55 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g1426 554 PANTHER SERINE/THREONINE-PROTEIN KINASE 49 490 - -
Vvi5g1426 554 Pfam EF-hand domain pair 431 495 IPR002048 GO:0005509
Vvi5g1426 554 Pfam Protein kinase domain 55 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g1426 554 ProSitePatterns EF-hand calcium-binding domain. 478 490 IPR018247 -
Vvi5g1426 554 ProSitePatterns EF-hand calcium-binding domain. 441 453 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1426 Vvi-Chr5 22039368 22041727 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1426 1 549 EF-hand Containing Proteins AT2G31500 64.561 0.0 756
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vvi5g1426 Pkinase 5.6e-77 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1426 K13412 - vvi:100250838 1099.73