Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1425 ATGGACTCCGAGGACGATATGCACGATGCTAACGATGTCGACTCTTTGGAGGACTTCTACAGCGGCGACACCGCGGCCGACTCCGACGACGACAACGACGCCGATTACGACTTCGACAACGATTCCGATGACGACGCCGACGCCATCATGTTGCATCGCCATCAGCCTAATTATACCATCTTAAAGGAAGAAGATATACATCAGCATCAGGAAGATGATATTGCAAGAGTAGCTGCTGTTCTTTCAATAGCAAGTGTTTCAGCGAGCATCCTGCTCCGCCACTACCATTGGAGTGTTAGTAAAGTCAATGATGAATGGTTTGCTGATGAAAGTAGAGTCCGGAAAGCTGTTGGCTTATTGGAAGAACCACTTGTTCGATATCCCAATGCTAAAGAACTGACTTGTGGGATCTGTTTTGAAACCTATCCTCGTGATATGATACAATCAGCTGCTTGTGGTCATCCATTTTGTAGCACATGCTGGGAAGGTTATATTAGCACATCAATCAATGATGGTCCTGGTTGTTTGATGTTAAGATGCCCTGATCCATCTTGCCGAGCTGCTGTGGGCCAAGACATGATCAATCTCTTGGCATCTGATGAAGACAACGAGAAGTATTCTCGTTACCTTCTTAGATCATATATCGAAGACAATAGGAAGACCAAATGGTGTCCTGCCCCAGGTTGTGAGTATGCTGTGGAGTTCGTTGCTGGTAGTGGGAGCTATGATGTAGCCTGCCAGTGCTCATACGGATTTTGTTGGAATTGTACAGAGGAAGCTCATCGTCCAGTGGACTGTAGCACTGTGGCCAAGTGGATTTTGAAGAACAGCGCTGAATCTGAAAACATGAATTGGATACTAGCTAATTCGAAGCCTTGTCCGAAGTGTAAGCGTCCAATTGAAAAAAACCAAGGGTGTATGCATATTACATGCACACCACCCTGCAAATTTGAATTTTGCTGGCTATGCCTTGGTGCATGGTCAGATCATGGTGAGAGGACGGGTGGCTTTTACGCATGTAATCGATATGAAGCAGCAAAGCAAGAGGGAGTGTATGATGAAACTGAGAGAAGACGGGAGATGGCGAAAAATTCTTTAGAACGATACACTCATTATTATGAACGGTGGGCGACCAACCAATCGTCAAGGCAAAAAGCTCTTGCAGATTTACATCAAATGCAAAACGTGAATATTGAGAAGCTCAGTGACAAACAGTGCCAACCTGAATCACAGCTCAAGTTCATAACAGAGGCCTGGCTACAGATAGTTGAATGCAGACGGGTGCTGAAATGGACATATGCATATGGTTACTACTTACCCGAGCATGAGCTTCCCAGGAGACAATTTTTTGAGTACTTGCAAGGTGAGGCGGAGTCGGGTTTGGAAAGGCTTCATCAATGTGCAGAGAAGGAATTACAAACATACCTCAATGTTGATGGTCCATCAGCAGATTTCAATGACTTCCGCACAAAGCTAGCTGGACTGACAAGTGTAACACGGAATTACTTCGAGAACCTGGTCAGAGCATTGGAGAATGGGCTGTCAGATGTAGACTCTTATGGGGCTTGTAGCAGGACGACAAGTTCAAAGAGCATGGGAGGCACCAGTAAGGCTAGAGGTGGAAGGGGAAAGGGAACTACATCCCGATCCAGTAGCTCCAACAAAACCCCAGACGATTCAAGTCGATGGTATTGTGAACACTGTGCTACTGCTAATGCCAAGTCTGCCTACACATGCCAGATGTGCCACCAGCGACGGGCCTAA 1764 0.462 MDSEDDMHDANDVDSLEDFYSGDTAADSDDDNDADYDFDNDSDDDADAIMLHRHQPNYTILKEEDIHQHQEDDIARVAAVLSIASVSASILLRHYHWSVSKVNDEWFADESRVRKAVGLLEEPLVRYPNAKELTCGICFETYPRDMIQSAACGHPFCSTCWEGYISTSINDGPGCLMLRCPDPSCRAAVGQDMINLLASDEDNEKYSRYLLRSYIEDNRKTKWCPAPGCEYAVEFVAGSGSYDVACQCSYGFCWNCTEEAHRPVDCSTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEAAKQEGVYDETERRREMAKNSLERYTHYYERWATNQSSRQKALADLHQMQNVNIEKLSDKQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHELPRRQFFEYLQGEAESGLERLHQCAEKELQTYLNVDGPSADFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVDSYGACSRTTSSKSMGGTSKARGGRGKGTTSRSSSSNKTPDDSSRWYCEHCATANAKSAYTCQMCHQRRA* 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1425 587 SUPERFAMILY RING/U-box 130 216 - -
Vvi5g1425 587 Gene3D - 262 517 - -
Vvi5g1425 587 SUPERFAMILY RING/U-box 204 273 - -
Vvi5g1425 587 SMART ibrneu5 270 340 IPR002867 GO:0008270
Vvi5g1425 587 SMART ibrneu5 204 266 IPR002867 GO:0008270
Vvi5g1425 587 CDD BRcat_RBR_ANKIB1 211 275 - -
Vvi5g1425 587 ProSiteProfiles TRIAD supradomain profile. 131 344 IPR044066 -
Vvi5g1425 587 MobiDBLite consensus disorder prediction 1 41 - -
Vvi5g1425 587 CDD Rcat_RBR_ARI7-like 289 343 - -
Vvi5g1425 587 MobiDBLite consensus disorder prediction 524 559 - -
Vvi5g1425 587 Pfam IBR domain, a half RING-finger domain 283 331 IPR002867 GO:0008270
Vvi5g1425 587 Pfam IBR domain, a half RING-finger domain 204 266 IPR002867 GO:0008270
Vvi5g1425 587 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 218 IPR013083 -
Vvi5g1425 587 FunFam RBR-type E3 ubiquitin transferase 129 218 - -
Vvi5g1425 587 ProSiteProfiles Zinc finger RING-type profile. 135 179 IPR001841 -
Vvi5g1425 587 SUPERFAMILY RING/U-box 285 333 - -
Vvi5g1425 587 CDD RING-HC_ARI6-like 132 193 - -
Vvi5g1425 587 MobiDBLite consensus disorder prediction 524 561 - -
Vvi5g1425 587 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 50 432 IPR031127 GO:0004842|GO:0016567
Vvi5g1425 587 MobiDBLite consensus disorder prediction 23 41 - -
Vvi5g1425 587 FunFam RBR-type E3 ubiquitin transferase 267 517 - -
Vvi5g1425 587 ProSitePatterns Zinc finger RanBP2-type signature. 563 582 IPR001876 -
Vvi5g1425 587 Pfam Ariadne domain 353 521 IPR045840 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1425 Vvi-Chr5 22025294 22037264 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1425 17 586 ARIADNE family AT1G65430 71.826 0.0 857
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1425 K11968 - vvi:100262873 1142.49