Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1418 ATGAGCGGGAGCAGAGCGAACGCGGTGTTCTACGCCGAGTCCTACCATCCGATCCAGGCCGGAAGCATCGACGGCACAGATACTCTCCCCCACGACAATGCCGTCTACAGAGCTCTCCTCTGCTCCTCTGCCGGCCTCTATGACCCATTTGGTGATCCGAAGGTAATTGGAGACCCTTACTGCACTGTGTTCGTTGGTCACCTCAACCACCTCACTACTGAAGACACTCTTCATAAGGCTATGAGCAAATTTGGTAGAGTTAAAAGCTTGCGATTGGTCAGGCACATTGTAACTGGGGCATCACAGGGCTACGCTTTTGTTGAATACGAAACAGAAAGAGAGATGCGGCGGGCATACGAGGATGCTCACCATTCCATGATTGATGATTGTGAAATTATTGTTGATTATAACAGGCAGCAGTTGATGCCAGGGTGGATTCCAAGAAGGTTAGGAGGTGGCATTGGTGGTAAAAAGGAGTCAGGACAGCTTCGTTTTGGAGGACGAGAGAGACCATTTCGAGCTCCCCTGCGACCGATCCCATTGGATGATCTGAAGAGGCTCGGCATTCCACCTCCACCAGAAGGAAGGTACATGTCACGCTTTCAGGTGCCACCACCTCCCAGAAGAAAAAGGAGCAATATGGACAGGGAAGAACCTTCGCACAGGGGAAGCTCTATTGACAGGGAAGATCGATATCACAAAGGTGGCTCTATAGAGGGGGAAGAACATTCTCATGAGGGGAGCTCTGTGGATAGGGAAGAACACTCCCACAGAAGGAGCTCTATAGACAAAAGAAGTTCCATTGACAGGGAAGAAAGGTTTCACAAAAGAAGCTCTAGCGACAGGGAAGTGCGCTCTCACAAAAGAAGCTCCACTGACTTGGTAGAACGCTCAGACAAAAGAAGCTTCATCCACGGGGAAGAACGCTTTCACAGTAGGAGCTCCATGGATTGGGAAGAGCACTCTCACAAAAGCTCTATGGACAGGGAAAGACACAGTCACAAGCGCCATAGACAGTACTGA 1023 0.5015 MSGSRANAVFYAESYHPIQAGSIDGTDTLPHDNAVYRALLCSSAGLYDPFGDPKVIGDPYCTVFVGHLNHLTTEDTLHKAMSKFGRVKSLRLVRHIVTGASQGYAFVEYETEREMRRAYEDAHHSMIDDCEIIVDYNRQQLMPGWIPRRLGGGIGGKKESGQLRFGGRERPFRAPLRPIPLDDLKRLGIPPPPEGRYMSRFQVPPPPRRKRSNMDREEPSHRGSSIDREDRYHKGGSIEGEEHSHEGSSVDREEHSHRRSSIDKRSSIDREERFHKRSSSDREVRSHKRSSTDLVERSDKRSFIHGEERFHSRSSMDWEEHSHKSSMDRERHSHKRHRQY* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1418 340 FunFam Small nuclear ribonucleoprotein U11/U12 subunit 35 48 169 - -
Vvi5g1418 340 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 10 269 - -
Vvi5g1418 340 MobiDBLite consensus disorder prediction 209 327 - -
Vvi5g1418 340 SMART rrm1_1 62 135 IPR000504 GO:0003723
Vvi5g1418 340 MobiDBLite consensus disorder prediction 151 340 - -
Vvi5g1418 340 SUPERFAMILY RNA-binding domain, RBD 49 167 IPR035979 GO:0003676
Vvi5g1418 340 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 63 132 IPR000504 GO:0003723
Vvi5g1418 340 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 61 139 IPR000504 GO:0003723
Vvi5g1418 340 Gene3D - 48 168 IPR012677 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1418 61 137 Eukaryotic Initiation Factors Gene Family AT1G49760 29.870 3.92e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1418 K13155 - vvi:100261074 666.766