Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1367 ATGGGGAAAGTGGGAAAGCTTAAGCATGAAAACCTGGTTCTTTTCCTTGGTTACTGCATCTTTCAAGACGAGAAGTTTTTAGTATACGAGTGTATGGAGAATGGAAGTCTTGATGTGTGGTTGAGGAATAGAACAGATGCAGTTGAGGCCATGGACTGGCCCACGAGGTTCAAGATCTGTTTGGGATCTGCCAGAGGGCGCTTTTCATCATGGCATTGTTCTTCACATTATTTTAAGAGATATCAACCCTAG 252 0.4325 MGKVGKLKHENLVLFLGYCIFQDEKFLVYECMENGSLDVWLRNRTDAVEAMDWPTRFKICLGSARGRFSSWHCSSHYFKRYQP* 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1367 83 FunFam - 1 82 - -
Vvi5g1367 83 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 5 66 - -
Vvi5g1367 83 Gene3D Transferase(Phosphotransferase) domain 1 2 74 - -
Vvi5g1367 83 SUPERFAMILY Protein kinase-like (PK-like) 5 66 IPR011009 -
Vvi5g1367 83 Pfam Protein tyrosine and serine/threonine kinase 5 66 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1367 Vvi-Chr5 21231121 21231372 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1367 1 66 Receptor kinase-like Gene Family AT5G07280 60.606 1.61e-23 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Vvi5g1367 PK_Tyr_Ser-Thr 6.1e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1367 - - vvi:100246369 120.168