Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1356 ATGGGAAAGGGTGAAAGCAGCAACACGAAGGCCACAATCATCTCGGCATCCTCCTTCCTCAGATCTGTGACTTTGCACGACTGGTGGCTGCTTAAGACAAACGCCAACCGCTTGGCCGTTGGAGGCTTCGCTACTCGAGAGAGACAAGGAATAAGAGTTTTCAGCTCTGGAGCAATTGCCAAGAGGCATGATGCCACCACTCTTGAAACAGCAGATGGCATAACTATTACCATTGTTGGTTTCTTAAACAAGTCTCGCACACATCAAAATGGCTTTCCATCTGAGGTTTGCAAACATTTCCTGTTTGGATTTCCATATCACTGGGAGGAGTATGCGGTTCAATGTTTTGTTGGAGAATCTACCAAAAGTGGTGTTTCAAAAAAACCTTCTGGTTGTGAAGAGTTCAACTTGCCTTCAACCAGTAGTGAAAATAATCTACTGCCTGCATCTTTGGATGAGCTCCCGGTGACTAGGGTTCGTGATCTTTTAATGTCCACTCTTGGAGATTCTAAAACACTAACAAATAGTATTTTTAGTGATATAGTGGGAAGAGTATCTAACCTTTCAAACATGAAAGGTAATAGCCCAACCACTGTGGATACTGAATTGGATAGAACTCCAAGGAATCATAAAAAGGCCGAGGTTGAGAAGTTCGAAGATGACAACAGCATCTTGGATGTGTCAGATATGAGAACTGAAGAATGTAAGAAAAATATTTGTCAATCTAGCGGGGTTATGAATGACTCTACCCCAAGTAGACGTGTTTCGACTAGAACCATGACAAGGTTGAAGAATTTAAAAAGCCAGCTGGAATGGAATCTTTCATCAAGCACTTCCAAGAAGCAAAAGACTCGGGAGAATTCTGAAAAACGCCTGTTGACAAATAGTAGTAATGATGTACTGAGAAGATCCAGTGGTAATGATTTCAAACATGCTAGAAAAGACATGAAAACTAATGGTCCAATAAAGACTATGGATTCTGATTTGGATAAATTTATTAAACATAAGATGGCAAAGGTTGAGCAGAAGCGCACAGATAACTGTGTATCCATGGATACCATGGATATTAGAAAAGAAGAATGTCAGAAATATTTTTGTCGATCAGAAGTGGGTATGCATGCCCTTTCCCCAGATAGGGGTGTTGCCACAAGAAGCATGGCTAGATTGAAGAATGTCAAAAACAACCCATGA 1191 0.4097 MGKGESSNTKATIISASSFLRSVTLHDWWLLKTNANRLAVGGFATRERQGIRVFSSGAIAKRHDATTLETADGITITIVGFLNKSRTHQNGFPSEVCKHFLFGFPYHWEEYAVQCFVGESTKSGVSKKPSGCEEFNLPSTSSENNLLPASLDELPVTRVRDLLMSTLGDSKTLTNSIFSDIVGRVSNLSNMKGNSPTTVDTELDRTPRNHKKAEVEKFEDDNSILDVSDMRTEECKKNICQSSGVMNDSTPSRRVSTRTMTRLKNLKSQLEWNLSSSTSKKQKTRENSEKRLLTNSSNDVLRRSSGNDFKHARKDMKTNGPIKTMDSDLDKFIKHKMAKVEQKRTDNCVSMDTMDIRKEECQKYFCRSEVGMHALSPDRGVATRSMARLKNVKNNP* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1356 396 PANTHER KINETOCHORE-ASSOCIATED PROTEIN KNL-2 HOMOLOG 12 305 - -
Vvi5g1356 396 MobiDBLite consensus disorder prediction 304 321 - -
Vvi5g1356 396 MobiDBLite consensus disorder prediction 268 323 - -
Vvi5g1356 396 Pfam SANTA (SANT Associated) 23 111 IPR015216 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1356 Vvi-Chr5 21125137 21127612 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vvi5g1356 SANTA 2.7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1356 - - vvi:104879423 793.882