Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1352 ATGGGCTCTAGTGGAGTGAACTTTTCAGCATTGAGGATAAAGAAGGGACCAACAAATCAATGTGTTTGCCTGGTTGATGCATTGGGCAATCATACTATGCGGCCCTGTATCTCAAGTGTTGTTAAGATTCAGGCAGAGGAATTAACTAAAGAGGATTTTAACGGGGTAAAGTGGTTGGTAATGAGATATGGGATATATAATTTGGAAGTTATTCATGCTGCAATTCAGATGGCCAAAGAGGAGGGCATATTTGTATCCTTGGATTTGGCCAGTTTTGAGATTGGCCAGGGAACTTACAGTAATGTTTACAGGGCTCGTGATCTGGACAAACGGAAAATTGTTGCTTTGAAGAAAGTTAGGTTTGATAACCTGGAGCAAGAGAGTGTCCGCTTTATGGCAAGGGAAATTCATGTTCTGCGCAGGCTTGATCATCCAAATATAATAAAACTGGAAGGTCTAGTCACATCAAGGATGTCTTGCAGCTTGTATCTTGTTTTTGAGTACATGGAACATGATCTAGCAGGTCTCGCCTCACACCCTGGTCTCAAGTTTACAGAACCACAGGTTAAATGTTATATGCAGCAACTTTTACGTGGACTTGATCATTGTCACAGCCGTGGTGTTTTGTATCGTGATATAAAGGGTTCCAACCTTCTAATTGACAACAGTGGCATCTTGAAGATAGCAGACTTTGGTTTGGCAAGTTTTTTTTATCCCCATCAAATCCAGCCACTGACAAGCCGTGTGGTAACACTTTGGTACCGGCCACCTGAGCTCTTACTTGGAGCCACTTACTATGGGACTGTTGTGGATTTATGGAGCACTGGTTGTATACTGGCTGAACTATATGTTGGCAAGCCTATAATGCCAGGAAGAACAGAGGTGGAACAGTTGCATAAAATTTTCAAGCTTTGTGGCTCTCCATCTGAGGATTATTGGAGAAAATCAAAGTTGCCACATGCAACCATATTTAAGCCCCAACAGCCTTATAGGCGCTGTGTTGCAGAAACATTTAAAGACTTTCCTACACCTGCATTAGGGCTTATGGAAACACTTCTTTCCATAGATCCTGCTGATCGTGGATCTGCAGCCTCTGCTTTTAAAAGTAAGTTCTTTACAGTAAAGCCACTTCCTGGTGCTCCTTCAAGCTTGCCTAAGTATCCTCCCAGCAAAGAGTTTGATGCAAAAGTACGAGATGAAGAAGCTAGAAGATGGTTCGGAACTTTAGAGGACCTCTTCTAG 1242 0.4251 MGSSGVNFSALRIKKGPTNQCVCLVDALGNHTMRPCISSVVKIQAEELTKEDFNGVKWLVMRYGIYNLEVIHAAIQMAKEEGIFVSLDLASFEIGQGTYSNVYRARDLDKRKIVALKKVRFDNLEQESVRFMAREIHVLRRLDHPNIIKLEGLVTSRMSCSLYLVFEYMEHDLAGLASHPGLKFTEPQVKCYMQQLLRGLDHCHSRGVLYRDIKGSNLLIDNSGILKIADFGLASFFYPHQIQPLTSRVVTLWYRPPELLLGATYYGTVVDLWSTGCILAELYVGKPIMPGRTEVEQLHKIFKLCGSPSEDYWRKSKLPHATIFKPQQPYRRCVAETFKDFPTPALGLMETLLSIDPADRGSAASAFKSKFFTVKPLPGAPSSLPKYPPSKEFDAKVRDEEARRWFGTLEDLF* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1352 413 ProSiteProfiles Protein kinase domain profile. 88 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g1352 413 PANTHER CELL DIVISION PROTEIN KINASE 93 378 - -
Vvi5g1352 413 Pfam Protein kinase domain 93 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g1352 413 SMART serkin_6 93 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g1352 413 Gene3D Transferase(Phosphotransferase) domain 1 171 408 - -
Vvi5g1352 413 CDD STKc_CDK9_like 92 372 - -
Vvi5g1352 413 Gene3D - 1 106 IPR029056 -
Vvi5g1352 413 SUPERFAMILY Protein kinase-like (PK-like) 93 373 IPR011009 -
Vvi5g1352 413 SUPERFAMILY Ribokinase-like 3 92 IPR029056 -
Vvi5g1352 413 FunFam probable serine/threonine-protein kinase At1g54610 171 410 - -
Vvi5g1352 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 208 220 IPR008271 GO:0004672|GO:0006468
Vvi5g1352 413 FunFam probable serine/threonine-protein kinase At1g54610 81 170 - -
Vvi5g1352 413 ProSitePatterns Protein kinases ATP-binding region signature. 94 117 IPR017441 GO:0005524
Vvi5g1352 413 Gene3D Phosphorylase Kinase; domain 1 107 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1352 Vvi-Chr5 21093927 21098229 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1352 93 404 Core Cell Cycle Gene Families AT5G10270 52.134 1.99e-109 329
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vvi5g1352 Pkinase 1e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1352 - - vvi:104879100 773.081