Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1343 ATGGGTGGGGGCGAGTTTCGTCGGCCCGGTTTGGTGGCATATGCTCCTCCTCCTGGCTACTTCGTATTGGAGAATAACATTACTCTAGAGGATATTTCTGTGACTAAAAGAGGCAGGATGCGGAGGTGGCTCTGTTGTACTTGTCACGTGGAAGAGCCTTACCAGTCAAATGAAAGCGAGCTCTTGAAAAGCCCCAGGAACCACACAGATGGAAACCCAAAAGGCTCAAAGGTGTCAGCTCCTGTTAGAAGTGAAGTGCAAAAGACAGCACCCCCTATTGAAGTACCTGAATTGTCTCTGGAAGAACTAAAGGAAAAGACTGACAATTTTGGATCAAAGGCATTGATTGGGGAAGGATCCTATGGAAGAGTATATTACGCCAGCTTGAATAATGGAAAAGCTGTGGCTGTAAAAAAACTTGATGTTTCATCTGAGCCTGAGACCCCTGTCGAATTTTTAACTCAGGTTTCCATGGTTTCAAGATTGAAGCACGAAAATCTGGTTGAGTTGCTTGGTTATTGTGTGGACGGAAACCTCCGTGTGTTGGCATACGAGTTTGCAACCATGGGATCTCTGCACGACATTTTGCATGGCAGAAAGGGAGTCCAGGGGGCACAACCAGGTCCTGTGCTTGACTGGATGCAACGGGTGAGAATTGCTGTTGATGCAGCTCGGGGATTGGAGTATCTCCATGAAAAGGTTCAACCTTCCATAATACATAGAGATATCAGATCTAGCAATGTGCTCCTATTTGAAGACTTTAAAGCCAAGATTGCAGATTTTAATCTTTCAAATCAGGCTCCTGACATGGCTGCTCGCCTTCATTCTACTCGAGTCCTGGGGACCTTTGGCTATCATGCACCAGAGTATGCAATGACTGGACAATTGACTCAGAAGAGTGATGTGTATAGTTTTGGAGTTGTTCTGTTAGAGCTTCTAACTGGGAGAAAACCTGTTGATCATACCATGCCTCGTGGACAACAAAGTCTGGTCACCTGGGCTACTCCAAGACTGAGTGAAGACAAAGTTAAACAATGTGTAGATCCCAAACTAAAGGGAGAATATCCTCCGAAAGGAGTTGCTAAGCTGGCAGCTGTGGCAGCATTATGTGTTCAGTACGAAGCTGAGTTCCGGCCAAATATGAGCATCGTTGTGAAGGCTCTCCAACCGCTTTTAAAGGCTGCTGCCCCAGCTCCTGAGGTTTAA 1206 0.461 MGGGEFRRPGLVAYAPPPGYFVLENNITLEDISVTKRGRMRRWLCCTCHVEEPYQSNESELLKSPRNHTDGNPKGSKVSAPVRSEVQKTAPPIEVPELSLEELKEKTDNFGSKALIGEGSYGRVYYASLNNGKAVAVKKLDVSSEPETPVEFLTQVSMVSRLKHENLVELLGYCVDGNLRVLAYEFATMGSLHDILHGRKGVQGAQPGPVLDWMQRVRIAVDAARGLEYLHEKVQPSIIHRDIRSSNVLLFEDFKAKIADFNLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLTQKSDVYSFGVVLLELLTGRKPVDHTMPRGQQSLVTWATPRLSEDKVKQCVDPKLKGEYPPKGVAKLAAVAALCVQYEAEFRPNMSIVVKALQPLLKAAAPAPEV* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1343 401 SUPERFAMILY Protein kinase-like (PK-like) 88 388 IPR011009 -
Vvi5g1343 401 FunFam PTI1-like tyrosine-protein kinase 3 188 398 - -
Vvi5g1343 401 MobiDBLite consensus disorder prediction 56 88 - -
Vvi5g1343 401 ProSiteProfiles Protein kinase domain profile. 110 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g1343 401 FunFam PTI1-like tyrosine-protein kinase 3 73 186 - -
Vvi5g1343 401 Pfam Protein tyrosine and serine/threonine kinase 115 388 IPR001245 GO:0004672|GO:0006468
Vvi5g1343 401 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 43 395 - -
Vvi5g1343 401 Gene3D Transferase(Phosphotransferase) domain 1 188 398 - -
Vvi5g1343 401 ProSitePatterns Tyrosine protein kinases specific active-site signature. 238 250 IPR008266 GO:0004672|GO:0006468
Vvi5g1343 401 ProSitePatterns Protein kinases ATP-binding region signature. 116 139 IPR017441 GO:0005524
Vvi5g1343 401 SMART tyrkin_6 110 388 IPR020635 GO:0004713|GO:0006468
Vvi5g1343 401 CDD STKc_IRAK 116 391 - -
Vvi5g1343 401 Gene3D Phosphorylase Kinase; domain 1 75 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1343 Vvi-Chr5 20953661 20958516 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1343 98 389 Receptor kinase-like Gene Family AT4G02010 52.542 1.78e-94 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Vvi5g1343 PK_Tyr_Ser-Thr 5.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1343 K13436 - vvi:100249750 681.404