Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1333 ATGGCATTTCCTCTGAAGGAAGAAGAAGAGGAGGTCGACTCCGGCACCGGCACTCCCGTCCGCTACCTTCCTCTTCGCCACGTCTATTCCACTTCTGCGCCTTGCGTCAGTGCCAGTGGATCGTCTAACGTCGTCACCAAGAAGGTCAAGGCCAGGAGGATGATCGCCGACGGCTTTGACGGCGAGGGCGACGGCGTCGATCAGAAGCCGTACCCGGCTAAGCCTCCGGTCGTGCACGTGTACGCCCGGCGCCGCAAGAGGCCGCGCAATTTGACAGCGGAGCGACCGGAGTCGGGGGCTTTGGTGGCTGTGAAGGAGGAGAGGTGTGAATCGGATGGTTGCGAAGGGGTTGGTGGTGGAGATCGAGGCGTAGGGGTTTTGGGGAAGAAGAGGAGAAGTGCGAATTTGGAGGTGAAAAACTTGGGCGATAATTCGAGGGGAGTGGGCAGTTCAGTACGGCGTCGTTTGAGGGAAGCCAGGAAAGACAGCACTGTCGACCTTCCGCATAGAAGAAAGCGCAAATCTTCGGAGAATTTGACGAAAGTCGACTCTAATTCGGCTTGCATCAAGCGGTGGCTTTGGTTGAATTTTGATGACGTTGATCCTGAAAAATTCATAGGATTACAATGCAAGGTTTACTGGCCGTTGGATGGTGAATGGTACCGTGGTTGCATTATTGGGTATGATTTGGAGGCCAACCGGCATCAGGTTAAATACAATGATGGTGATAAAGAAGAATTGATTCTCTCAAGTGAGAAAATTAAATTTTATGTATCTCGCGAGGATATGCAACATTTGAACCTGAGTCTTAGTGTTAGAAGTCTGGATAGTGATGACATTGATTATGATGAGATGGTTGTGTTGGCTGCAAGTTGGAATGATTGCCAAGACCACGAGCCTGGGGATATCATATGGGCCAAGCTTACTGGTCATGCTATGTGGCCAGCAATTGTTGTGGATGAGTCAATTATTCATAATCGTAAAGGTCTAAACAAAATTTCAAAAGAGAAATCACTTCCTGTGCAGTTTTTTGGTAGTCATGATTTTGCAAGGGTTAAAACTAAACAGGTTACCCCATTTCTTAAGGGACTGCTTTCTTCTTTCCACCTGAAGTGCACAAAACCACATTTCCATCAAAGCTTGGTAGAATCCAAAGCGTATCTCAGCGAACAGAAGCTTTCAAAACGGATGTTACGGATGCAAAAGCTCACAGAGGATGATGATTGTGAAAGTATGAGTGGAGAGGATGAAAAGAGAACTGATTCAGGTGATGATTGCATAGGAGATGAAAGAGTAAAGAGAAAACTAGACGACCTTATAAAATTCCCATTTGAAATAGGGGATTTGCAAGTAATACGCCTTGGAAAAATTGTCAAGGACTCAGATCGTTTCCAGGTTGAGGGATTCATCTGCCCTGAAGGATATACTGCTATGAGAAAGTTTACTTCAATTACAGATCCAAGCTTATGCGCATTATATAAAATGGAAGTGCTGAGAGATGCTGAATCAAAGATTCAACCCTTATTTAGGGTGACATTGGACAATGGAGAGCAGTTCCAAGGATCAACTCCATCTTCTTGCTGGAATAAAATTTTTAGAAGGATAAGAAAGATGCAAAACAGTGCTTCTGATGGTTCTAGTGCAGAAGGTGGAGCTGAAAAATTAAATGAATCCGGTTTTGATATGTTTGGCTTTTCCAATCCTGAGATTTTCAGACTTGTACAGGAGTTGTCAACTTCCAAAATTTCCTCAAAATTCTCCATGTCCAAGTCAATCTCTAGAAGATATCAAGACTTGTCTTCTGGTTACAGGCCTGTTCGTGTTGACTGGAAAGATCTTGATAAATGCAGTGTTTGCCACATGGATGAGGAGTATGAGAACAATCTGTTTCTTCAGTGCGACAAATGCAGAATGATGGTTCATGCTAGATGCTATGGGGAATTAGAACCTGTTGATGGGGTGCTATGGTTATGCAAATTATGTGGCCCAGGGGCTCCTGATTCCCCCCCTCCTTGCTGCCTCTGTCCTGTTACCGGTGGGGCCATGAAGCCTACAACTGATGGACGCTGGGCTCATCTGGCTTGTGCCATCTGGATACCTGAAACTTGCTTATCCGATATCAAAACCATGGAGCCCATTGATGGACTGAGTAGAATCAATAAGGACCGATGGAAGCTTCTATGTAGCATCTGTGGTGTTTCTTATGGGGCTTGCATCCAATGTTCAAACAGTACTTGTCGTGTAGCTTATCACCCACTTTGCGCACGTGCTGCGGGCCTTTGTGTTGAACTTGAGGATGAGGATAGACTCCATCTGATTTCTGTAGAGGATGATGAGGATGATCAGTGCATTCGACTACTTTCCTTCTGCAAGAAGCATAGACAGCCATCTAATGAGCGTACAGCTTTTGATGAAAGGATTGGGCAAGTGGCTCGTGAATGTTCTAACTATAACCCGCCTTCTAATCCATCAGGCTGTGCTCGCACTGAGCCTTATAACCATTTTGGGAGAAGGGGTCGGAAAGAACCTGAAGCCCTTGCTGCTGCATCCTTGAAGCGGTTGTTTGTAGATAATAGGCCATATTTGGTTGGTGGTTACTGTCAACATGAATCCTTGGGGAATCCATTATCTTCTAGTGCCCTCTCAGGTTCTAAATTTTCCTTCAGAAATCAAAAAATAAAAGCTTCTCAGCTTGATGCTCCTAAGAGCATACTCTCTATGGTTGAGAAATATAATTACATGAGGGAGACCTTCAGAAAGAGACTGGCTTTTGGAAAATCAGGAATACATGGATTTGGCATATTTGCGAAGCAGCCACATAGAGCGGGAGATATGGTTATTGAATATACAGGCGAACTTGTTAGACCCTCAATAGCTGACAGGAGAGAACGACTCATATACAATTCGTTGGTGGGTGCAGGGACTTATATGTTCCGTATTGATGATGAACGCGTCATTGATGCCACAAGGGCAGGAAGCATAGCTCATTTGATTAATCACTCATGTGAACCAAATTGCTATTCGAGAGTTATAAGTTTTAATGGTGATGACCATATAATTATTTTTGCGAAGAGGGATATTAAGAGATGGGAAGAACTGACTTACGATTACAGGTTCTCCTCTTCTTGTGTTCTATATATTCCTCTTTCTCTGTTTCTCTGTGCTTACTTTGTTTTTTTTTTTGTTATAGATTTTTTTCAATTGATGAACAACTAG 3216 0.4415 MAFPLKEEEEEVDSGTGTPVRYLPLRHVYSTSAPCVSASGSSNVVTKKVKARRMIADGFDGEGDGVDQKPYPAKPPVVHVYARRRKRPRNLTAERPESGALVAVKEERCESDGCEGVGGGDRGVGVLGKKRRSANLEVKNLGDNSRGVGSSVRRRLREARKDSTVDLPHRRKRKSSENLTKVDSNSACIKRWLWLNFDDVDPEKFIGLQCKVYWPLDGEWYRGCIIGYDLEANRHQVKYNDGDKEELILSSEKIKFYVSREDMQHLNLSLSVRSLDSDDIDYDEMVVLAASWNDCQDHEPGDIIWAKLTGHAMWPAIVVDESIIHNRKGLNKISKEKSLPVQFFGSHDFARVKTKQVTPFLKGLLSSFHLKCTKPHFHQSLVESKAYLSEQKLSKRMLRMQKLTEDDDCESMSGEDEKRTDSGDDCIGDERVKRKLDDLIKFPFEIGDLQVIRLGKIVKDSDRFQVEGFICPEGYTAMRKFTSITDPSLCALYKMEVLRDAESKIQPLFRVTLDNGEQFQGSTPSSCWNKIFRRIRKMQNSASDGSSAEGGAEKLNESGFDMFGFSNPEIFRLVQELSTSKISSKFSMSKSISRRYQDLSSGYRPVRVDWKDLDKCSVCHMDEEYENNLFLQCDKCRMMVHARCYGELEPVDGVLWLCKLCGPGAPDSPPPCCLCPVTGGAMKPTTDGRWAHLACAIWIPETCLSDIKTMEPIDGLSRINKDRWKLLCSICGVSYGACIQCSNSTCRVAYHPLCARAAGLCVELEDEDRLHLISVEDDEDDQCIRLLSFCKKHRQPSNERTAFDERIGQVARECSNYNPPSNPSGCARTEPYNHFGRRGRKEPEALAAASLKRLFVDNRPYLVGGYCQHESLGNPLSSSALSGSKFSFRNQKIKASQLDAPKSILSMVEKYNYMRETFRKRLAFGKSGIHGFGIFAKQPHRAGDMVIEYTGELVRPSIADRRERLIYNSLVGAGTYMFRIDDERVIDATRAGSIAHLINHSCEPNCYSRVISFNGDDHIIIFAKRDIKRWEELTYDYRFSSSCVLYIPLSLFLCAYFVFFFVIDFFQLMNN* 1072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1333 1071 ProSiteProfiles PWWP domain profile. 300 363 IPR000313 -
Vvi5g1333 1071 MobiDBLite consensus disorder prediction 1 15 - -
Vvi5g1333 1071 Pfam F/Y rich C-terminus 506 583 IPR003889 GO:0005634
Vvi5g1333 1071 SMART fyrc_3 508 602 IPR003889 GO:0005634
Vvi5g1333 1071 MobiDBLite consensus disorder prediction 1 20 - -
Vvi5g1333 1071 SUPERFAMILY Tudor/PWWP/MBT 204 246 - -
Vvi5g1333 1071 Gene3D - 442 581 - -
Vvi5g1333 1071 CDD ePHD_ATX1_2_like 672 793 IPR041956 -
Vvi5g1333 1071 SMART PHD_3 615 662 IPR001965 -
Vvi5g1333 1071 SMART PHD_3 727 794 IPR001965 -
Vvi5g1333 1071 CDD Tudor_Agenet_AtEML-like 206 256 - -
Vvi5g1333 1071 MobiDBLite consensus disorder prediction 140 178 - -
Vvi5g1333 1071 MobiDBLite consensus disorder prediction 404 425 - -
Vvi5g1333 1071 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 606 665 IPR013083 -
Vvi5g1333 1071 Pfam PHD-finger 628 661 - -
Vvi5g1333 1071 SMART set_7 920 1044 IPR001214 GO:0005515
Vvi5g1333 1071 CDD PWWP_AtATX1-like 299 393 - -
Vvi5g1333 1071 Gene3D SET domain 878 1045 IPR046341 -
Vvi5g1333 1071 SUPERFAMILY Tudor/PWWP/MBT 291 433 - -
Vvi5g1333 1071 ProSiteProfiles Extended PHD (ePHD) domain profile. 669 794 IPR034732 -
Vvi5g1333 1071 ProSiteProfiles FYR domain FYRN motif profile. 441 500 IPR003888 GO:0005634
Vvi5g1333 1071 ProSiteProfiles Tudor domain profile. 203 263 IPR002999 -
Vvi5g1333 1071 MobiDBLite consensus disorder prediction 150 178 - -
Vvi5g1333 1071 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 666 796 IPR013083 -
Vvi5g1333 1071 Pfam SET domain 931 1037 IPR001214 GO:0005515
Vvi5g1333 1071 CDD SET_SETD1-like 907 1041 - -
Vvi5g1333 1071 SMART PWWP_4 298 361 IPR000313 -
Vvi5g1333 1071 ProSiteProfiles Zinc finger PHD-type profile. 613 664 IPR019787 -
Vvi5g1333 1071 ProSitePatterns Zinc finger PHD-type signature. 616 661 IPR019786 -
Vvi5g1333 1071 Gene3D - 287 401 - -
Vvi5g1333 1071 PANTHER PHD FINGER PROTEINS 144 1043 - -
Vvi5g1333 1071 SMART TUDOR_7 202 260 IPR002999 -
Vvi5g1333 1071 ProSiteProfiles FYR domain FYRC motif profile. 504 590 IPR003889 GO:0005634
Vvi5g1333 1071 Pfam PWWP domain 301 366 IPR000313 -
Vvi5g1333 1071 FunFam Histone-lysine N-methyltransferase 667 796 - -
Vvi5g1333 1071 SUPERFAMILY FYVE/PHD zinc finger 609 680 IPR011011 -
Vvi5g1333 1071 CDD PHD_ATX1_2_like 615 661 IPR042010 -
Vvi5g1333 1071 Pfam F/Y-rich N-terminus 447 497 IPR003888 GO:0005634
Vvi5g1333 1071 Gene3D - 203 252 - -
Vvi5g1333 1071 SUPERFAMILY SET domain 918 1040 IPR046341 -
Vvi5g1333 1071 ProSiteProfiles SET domain profile. 920 1038 IPR001214 GO:0005515
Vvi5g1333 1071 Pfam PHD-zinc-finger like domain 671 793 - -
Vvi5g1333 1071 SMART fyrn_3 456 500 IPR003888 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1333 Vvi-Chr5 20741290 20798303 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1333 616 763 C2H2 Transcription Factor Family AT3G14740 39.073 2.88e-27 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vvi5g1333 zf-HC5HC2H_2 1.8e-33 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1333 - - vvi:100263501 2046.94