Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1332 ATGTGGACCCACACACTCTCATGGACTTTTCCTCAATCAGCATCTCCCTTTTTAACTCATTATTCTCTTTCCCTTTTTCTCCCTTTTCTTCTTTCCTTCTCCTCCTTCTCCTCCTCCTTCTTCTTCTTCTTCCATATCTTCCTCTCTCATAGTAAGTGTTTGATTTTCATCATGTATCCTTCTTCTGCTTCCTCCTCTTCTCACCGTTCACTGCATTCCTCCGGCCTTATTCGCTACGGTTCAGCTCCGGGCTCCCTCTTGACCTCCGCCGTCGATTCCCTCGTCTCAACTGACCGTGAATTCTCCCCCCTCGGATCTCACCATATCATGCCTCACCAGTACTTTTCCGGTGACTCTTCCTCCGAGTCCACCTGTAAGGTGGCTGCGCCGCCGGATCACAAGGAGGCCGGAGCCGGAGGCCCCGCTGCTATGTTGCAGAGGTCCTACGGGTTTAGTGAGATGCCTGTCGCCGGCTTCTCTACAGCTAGTAGTTTGAAAGGCGGTGGTGAAGGCGGCGGTGGCGGTGGATCTGCGCCGTCGTTGATTCGCCATAGCAGCTCCCCTGCTGGCTTCCTCAACCAGCTCACTGCCGATAACTTGACAAGGGGGACTGGAAACTATAGCTCTCAAGGTGGTTGTAATGGTGGTCATGGAATATCAAGGTTGAAGTCCCAGTTAAGCTTCAAGAGGCAAGATTCTCTTTCCCAGATCTCAGAAGTAAGTGAGAATATGGTTGATGGCATCAGCTCTGACAATGGCCACAGAAATGCCACTCATTCTTATGCCACTGCTAGTTTTCCTATGGATGCCTGGGACAATACCAACACCATTGTGTTTTCCACAACACCAAACAAACGAGCTAAGAACATCAATGGTGACATTCTCAACAGTCTCAGTTCCTTAGAGCCACAGTTTAGTCTGCCACAGACAAGTTTAGAGATGGCAGCAGTAGAGAAGCTGCTGCAAGTACCTGAAGACTCTGTTCCATGCAAAGTTCGAGCTAAGCGTGGCTGTGCCACTCATCCTAGAAGTATTGCTGAAAGGGAGAGAAGAACTAGAATAAGCGGGAAACTGAAGAAACTGCAAGATCTTGTTCCTAACATGGATAAGCAAACTAGCTATGCTGACATGTTGGACTTGGCTGTGCAACATATCAAAGGTCTTCAAAATGAAGTGCAGAAGCTCAATAAAGAACTGGAGAACTGTACTTGTGGTTGCAAGCAAGCCCTCTAA 1233 0.4866 MWTHTLSWTFPQSASPFLTHYSLSLFLPFLLSFSSFSSSFFFFFHIFLSHSKCLIFIMYPSSASSSSHRSLHSSGLIRYGSAPGSLLTSAVDSLVSTDREFSPLGSHHIMPHQYFSGDSSSESTCKVAAPPDHKEAGAGGPAAMLQRSYGFSEMPVAGFSTASSLKGGGEGGGGGGSAPSLIRHSSSPAGFLNQLTADNLTRGTGNYSSQGGCNGGHGISRLKSQLSFKRQDSLSQISEVSENMVDGISSDNGHRNATHSYATASFPMDAWDNTNTIVFSTTPNKRAKNINGDILNSLSSLEPQFSLPQTSLEMAAVEKLLQVPEDSVPCKVRAKRGCATHPRSIAERERRTRISGKLKKLQDLVPNMDKQTSYADMLDLAVQHIKGLQNEVQKLNKELENCTCGCKQAL* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1332 410 Coils Coil 378 405 - -
Vvi5g1332 410 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 85 398 - -
Vvi5g1332 410 SMART finulus 344 394 IPR011598 GO:0046983
Vvi5g1332 410 FunFam Transcription factor bHLH130 family 339 408 - -
Vvi5g1332 410 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 341 403 IPR036638 GO:0046983
Vvi5g1332 410 CDD bHLH_AtbHLH_like 343 395 IPR045239 -
Vvi5g1332 410 MobiDBLite consensus disorder prediction 162 184 - -
Vvi5g1332 410 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 338 388 IPR011598 GO:0046983
Vvi5g1332 410 Gene3D - 339 408 IPR036638 GO:0046983
Vvi5g1332 410 Pfam Helix-loop-helix DNA-binding domain 343 389 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1332 Vvi-Chr5 20722272 20730102 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1332 75 408 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G05805 49.587 5.37e-89 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi5g1332 HLH 6.8e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1332 - - vvi:100246361 680.248