Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1315 ATGGAGGATTCGTCCACACCCATGCTCCTCCTCACTTTCACTTGCCTCTGTCTTTCTCTCTCGGCCAACACCACCACCGCAGATGAAGCCGCCTTCATGACCAAGCTGGCCGCTGCCCTCTCCCCAACCCCGTCTGGCTGGTCCGGCACCAACCACTGCAAATGGTCCGGAGTCAAGTGCGACGCCATCGGCCAAGTCATCTCCATCAATCTTGCTTCCAGGTCGCTTTCGGGCATGTTGCCTTCGGACATAAATCAGCTTCCCCAGCTGCAGGCACTGTCTCTCCAAAAGAATCAGCTCTCGGGCCCCCTACCATCTCTCTCAAACCTCACGTCTCTCCAGAGCGTCTTTCTCGATAACAACAACTTCTCTTCCGTTCCGCCTGAGTTCCTCCTAGGCCTCAACAGCTTACAAACGTTTAGCATCAGCGAGAACCCTAGCCTGCAGCCCTGGAGAATCCCAGAACATCTTTCTGAATCCACAAGCCTGGCCTCCTTGTTGGCAAGCAATGCTAATATTTTTGGTACAATTCCAGAAATATTTGGATCATTCCCCAATTTACAATCCGTGAGGCTTTCTTACAACAATCTTACCGGCCCTCTGCCGCCTTCGTTTGGTGGCTCTGGGATCCAGAACTTGTGGCTCAATAATCAAAAAGTAGGGCTTTCGGGCAGGCTCGATGTGCTTGGAGCAATGGTGCAGCTGTCACAGGCTTGGCTCCATGCTAACGCCTTTTCGGGTCCCATCCCTGATCTTTCCAACAGCAGTGCCATTTTTGATCTACAACTTCGCGATAATCAGCTCACGGGTGTTCTTCTTCCTTCATTATTTTCCCATCCTAGGCTCGTTAATATATCTTTGCAGAACAATAAGTTGCAAGGGCCATATCCTAATTTTTCCAAAACCGTGGAGGTTACATTAGGATCGACCAACAACTTTTGTAACCCACAACCAGGTCCATGCGATCCTCAGGTCACTGCACTGCTTGAGGTGGCCAAAGCCTTGGGATACCCGATGATATTGGCTCAATCTTGGGAAGGAAATGATGCTTGTAAGGGATGGAGTTTTATTTCATGTGATGCGCAAGGAAAAAATGTGACTATAGTTAATTTTGGGAAGCAAGAGTGGAGTGGGTCGATTTCACCTGCCTTTGCCAATCTTACCTCACTGAGGAATTTGCTTTTAAATGACAATGACCTCAGTGGTACATTGCCAGCTAGCTTGACAAGCCTTAAAGAGCTTCGCATTTTGGACATCTCCAATAATAACCTTTCTGGGAGTTTACCACATTTTCCATCAACAGTTTCTGTCAAAGCCCAAGGTAATAACCTTCTTGGCACCAATTCAACCTCTGCAGGTGACGGAGGGGCGTCGGGATCAGGAAGTCCTGCTTCTAATTCAGATTCTACACCAACTACAACCCCATCCAAAGCCACAAGCTCTTCTTCCTCTCCGGGGTTCCTTGTTAGTGTTATTGTTGGTTCCGCTGTTTTCATGGGCATTGTGTCATTAGTAATTTATGGTCTGTATGCCAAAAGACGCCATAGGAAATTAGTAATGTCGAAAAGATCGCTGAAGGGGAAGGGAAGTGTAAGGAGTTTGATAACGGGTAAAGCAAATGGCAATGGTACTAGTGGATCTGATTCGCACAATCAAAGCAGTTCTAGCGGCGATATGCATGTTTATGATGGTGGCAATGTTGCTATTCCAATAGAGGTTCTACGGCAAGTGACAAACAATTTCGATGAAGCCAACATCTTGGGTAAGGGAGGATTTGGGGTTGTCTACAGAGGGGAACTCCACGATGGGACACAAATAGCGGTGAAAAGGATGGAATCTGCCATTGTGGGCACAAAGGGGCTGAGCGAGTTTCAGGCGGAAATCGGGGTTCTCACAAAAGTTAGGCACAGGCATTTAGTTGCACTACTTGGTTTTTGCATCAATGGCAATGAGAGGCTGCTGGTCTATGAGTATATGCCGCAAGGGACTTTAGGGCAGCACTTGTTTGAATACAATGAGACCGGGTTCTCTCCTCTTACTTGGAAGCAAAGGATTACAATTGCGTTGGACGTGGCCAAAGGGATGGAATATTTGCACAGCTTGGCACAGCAGAGTTTTATTCACCGCGATTTGAAACCATCTAATATCCTTCTTGGAACTGACATGAGAGCCAAGGTTTCTGATTTTGGTTTGGTTAAGAATGCGCCTGATGGGAAGTACTCGGTCGAGACACGGTTGGCTGGGACATTTGGATACCTTGCACCTGAATATGCTGCTACGGGAAGAGTGACGATAAAGGTGGATGTTTTTGCATTTGGGGTGGTCTTGATGGAGATGATCACGGGTAGAAAGTCACTAGATGAAGCCTTGCCAGAGGAGAAGTCACATCTGGTTAGTTGGTTCCGGAGAGTCCTCCCTAACCCAGACAACATCAGAGATGCCTTGGATCCCTCCCTACACCCTGATGAAGAAACCTTTAGAAGCATCTGCGAAGTAGCAGAACTAGCGGGACACTGCACAGCTCGTGAGCCACACCAGAGACCAGACATGAGCCATGCAGTTAATGTTTTATCGCACCTTTTAGACGAATGGAAACCTTCAGCTGATGATGAAGAAAATGATAACTTTGGCATTGATGACTTCAACTTGAGCCTTCCTCAAGCCTTGGAGAGATGGCAAGCTAATGAAGGGACTTCCAGTATGACCCTTAATCTCTATAACAGTGGAGCACAGAGCATATCAAAAAAGCGTTCAGCGTCTCATTCATTGGATCAGCAATGA 2781 0.4743 MEDSSTPMLLLTFTCLCLSLSANTTTADEAAFMTKLAAALSPTPSGWSGTNHCKWSGVKCDAIGQVISINLASRSLSGMLPSDINQLPQLQALSLQKNQLSGPLPSLSNLTSLQSVFLDNNNFSSVPPEFLLGLNSLQTFSISENPSLQPWRIPEHLSESTSLASLLASNANIFGTIPEIFGSFPNLQSVRLSYNNLTGPLPPSFGGSGIQNLWLNNQKVGLSGRLDVLGAMVQLSQAWLHANAFSGPIPDLSNSSAIFDLQLRDNQLTGVLLPSLFSHPRLVNISLQNNKLQGPYPNFSKTVEVTLGSTNNFCNPQPGPCDPQVTALLEVAKALGYPMILAQSWEGNDACKGWSFISCDAQGKNVTIVNFGKQEWSGSISPAFANLTSLRNLLLNDNDLSGTLPASLTSLKELRILDISNNNLSGSLPHFPSTVSVKAQGNNLLGTNSTSAGDGGASGSGSPASNSDSTPTTTPSKATSSSSSPGFLVSVIVGSAVFMGIVSLVIYGLYAKRRHRKLVMSKRSLKGKGSVRSLITGKANGNGTSGSDSHNQSSSSGDMHVYDGGNVAIPIEVLRQVTNNFDEANILGKGGFGVVYRGELHDGTQIAVKRMESAIVGTKGLSEFQAEIGVLTKVRHRHLVALLGFCINGNERLLVYEYMPQGTLGQHLFEYNETGFSPLTWKQRITIALDVAKGMEYLHSLAQQSFIHRDLKPSNILLGTDMRAKVSDFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTIKVDVFAFGVVLMEMITGRKSLDEALPEEKSHLVSWFRRVLPNPDNIRDALDPSLHPDEETFRSICEVAELAGHCTAREPHQRPDMSHAVNVLSHLLDEWKPSADDEENDNFGIDDFNLSLPQALERWQANEGTSSMTLNLYNSGAQSISKKRSASHSLDQQ* 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1315 926 FunFam receptor protein kinase TMK1 543 658 - -
Vvi5g1315 926 Gene3D Ribonuclease Inhibitor 27 318 IPR032675 -
Vvi5g1315 926 SMART serkin_6 581 861 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g1315 926 SUPERFAMILY L domain-like 324 432 - -
Vvi5g1315 926 SUPERFAMILY Protein kinase-like (PK-like) 556 857 IPR011009 -
Vvi5g1315 926 PANTHER OSJNBA0070M12.3 PROTEIN 11 907 - -
Vvi5g1315 926 FunFam Receptor-like kinase TMK4 27 319 - -
Vvi5g1315 926 Pfam Protein tyrosine and serine/threonine kinase 585 855 IPR001245 GO:0004672|GO:0006468
Vvi5g1315 926 Gene3D Transferase(Phosphotransferase) domain 1 659 882 - -
Vvi5g1315 926 MobiDBLite consensus disorder prediction 442 484 - -
Vvi5g1315 926 Pfam Leucine rich repeat N-terminal domain 322 360 IPR013210 -
Vvi5g1315 926 Pfam Leucine rich repeat N-terminal domain 29 61 IPR013210 -
Vvi5g1315 926 MobiDBLite consensus disorder prediction 535 559 - -
Vvi5g1315 926 MobiDBLite consensus disorder prediction 531 559 - -
Vvi5g1315 926 Gene3D Ribonuclease Inhibitor 323 449 IPR032675 -
Vvi5g1315 926 ProSiteProfiles Protein kinase domain profile. 581 861 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g1315 926 FunFam receptor protein kinase TMK1 659 876 - -
Vvi5g1315 926 ProSitePatterns Protein kinases ATP-binding region signature. 587 609 IPR017441 GO:0005524
Vvi5g1315 926 Gene3D Phosphorylase Kinase; domain 1 542 658 - -
Vvi5g1315 926 CDD STKc_IRAK 587 857 - -
Vvi5g1315 926 FunFam Leucine-rich repeat receptor-like kinase 323 448 - -
Vvi5g1315 926 SMART LRR_typ_2 411 433 IPR003591 -
Vvi5g1315 926 SMART LRR_typ_2 387 410 IPR003591 -
Vvi5g1315 926 SMART LRR_typ_2 110 133 IPR003591 -
Vvi5g1315 926 SMART LRR_typ_2 184 207 IPR003591 -
Vvi5g1315 926 ProSitePatterns Serine/Threonine protein kinases active-site signature. 706 718 IPR008271 GO:0004672|GO:0006468
Vvi5g1315 926 SUPERFAMILY L domain-like 50 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1315 Vvi-Chr5 20325549 20328541 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1315 49 857 Receptor kinase-like Gene Family AT5G49660 29.348 4.10e-92 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Vvi5g1315 PK_Tyr_Ser-Thr 6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1315 - - vvi:100253795 1719.9