Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1290 ATGTCAACTATATGTTTTTCAGGCTTTGAGACTGTTACATACATGCTGCAGGGAGCTTTCACTCATCAAGATTTTGCAGGCCATAAGGGCACAATCCGAACAGGGGATGTGCAGTGGATGACTGCAGGCAGAGGCATAATCCACTCTGAAATGCCTGCAGATGAAGGAACCCAAAAGGGCTTGCAGCTTTGGATCAATCTAGCATCCAAAGACAAAATGATTGAACCAAATTACCAAGAATTGCCGAGTGAGGACATCAAAAGAGCAGAGAAAGATGGCGTTGAAGTCCGGGTCATAGCAGGAGAATCAATGGGAGTCCGGTCCCCAGTTTACACCAGAACTCCAACAATGTATCTTGATTTTACTCTAAAACCAAGGGCCCAAATGCATCAAAGCATTCCAGAATCATGGAACTCCTTTGTGTACATAGTTGAAGGGGAAGGAGTATTCGGGGTAGTGAACTCATCTCCAGTGACCGCTCACCATGTCTTGGTTTTAGGCCCTGGTGACGGCCTGAGCGCGTGGAACAAGTCATCCAAACCGCTGAGATTTGTGCTCATTGGAGGCCAGCCTCTGAACGAACCTGTTGTCCAGTATGGCCCTTTTGTCATGAACACACAGAAAGAAATTGAACAAACTATTGAGGACTATCACTATAGCAAGAATGGATTTGAGATGGCCAAGTACTGGAGATCCCAGTAA 702 0.4601 MSTICFSGFETVTYMLQGAFTHQDFAGHKGTIRTGDVQWMTAGRGIIHSEMPADEGTQKGLQLWINLASKDKMIEPNYQELPSEDIKRAEKDGVEVRVIAGESMGVRSPVYTRTPTMYLDFTLKPRAQMHQSIPESWNSFVYIVEGEGVFGVVNSSPVTAHHVLVLGPGDGLSAWNKSSKPLRFVLIGGQPLNEPVVQYGPFVMNTQKEIEQTIEDYHYSKNGFEMAKYWRSQ* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1290 233 PANTHER PIRIN-RELATED 8 233 IPR012093 -
Vvi5g1290 233 PIRSF Pirin 5 231 IPR012093 -
Vvi5g1290 233 SUPERFAMILY RmlC-like cupins 8 231 IPR011051 -
Vvi5g1290 233 CDD cupin_pirin_C 115 191 - -
Vvi5g1290 233 Gene3D Jelly Rolls 87 192 IPR014710 -
Vvi5g1290 233 CDD cupin_pirin_N 8 67 - -
Vvi5g1290 233 Gene3D Jelly Rolls 7 218 IPR014710 -
Vvi5g1290 233 Pfam Pirin C-terminal cupin domain 118 222 IPR008778 -
Vvi5g1290 233 Pfam Pirin 6 65 IPR003829 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1290 Vvi-Chr5 19949647 19950683 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1290 8 228 Calmodulin-binding Proteins AT3G59220 68.161 5.81e-112 321
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1290 K06911 - vvi:100254895 468.003