Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1287 ATGTTTCATCAAAGACCAAGCTCCTCCCATGGTGGCACACCAAGCAAACACCTTTCATGGGGGTGCACAATCTTTCTAGTGTTGGCCTTAACCACTGCAGTTTCAGGCTTAGCCTCATCCTCCCACACCTCCACAGTCCCTAAAGCCTCTATGGAAGCCATTGTCTCTGCAGCTTGCAAAGCCACCTTCTACCAAACAGCATGCCAGTCAGCTCTCCTCTCATCCACCAATGGCGCTGTCCCTCAAACCCAGGCCGACCTCTTCGATCTTTCAGTGCAGTTCAGCCTCAACCAAGCGCGATCAGCCCGTGCCCATGTTCATGATCTCAGGCTGCTTGATCACAAGACTCAGATCGTTCGCGGCACCGATGACTGTATGGAGCTACTTGATGACACTCTAGACCAACTCACCAACGTCGCGAACCGCCGCAAAACCCTAATCGAAGATCCCGACGACGTCCAAACTTGGCTCAGCGCTGCGCTGACCAACCAAGCTACATGCCTGGAGAGCATCCAGACTTACCAGACTGGAGGCCAAAATGGTCTAATGCGGCCCATGGCACAAAATTTGACCTACTCCATCAGCAATTCTCTAGCACTCCATATGTCCACAAGGCCATCAAAGGAGGCACAAAGAACCAACACCGCCGGCCACCACCGGAGGCTGCTGTCGGATAGGTTTCCGGGGTGGGTGACGGCGGCGGAAAGGAAGCTTCTGGAAGCTTCTGTAGAGGAGATTGGGGCCACTGCAGTGGTGGCCAAGGATGGCAGTGGGACACACAAGACAATTGGTGAGGCTTTAGCGATGGTGGTCACATTGGAGGGCGAGGGTAGAACCGTAATTCACGTGAAAGCTGGGACTTATGACGAGGGTCTTAAGATCCCTTCCAGCCAAAAAAACGTTATGTTAGTAGGTGACGGGAAGGGCAAAACCGTCATTGTGGGTCACAAAAGTTACGCTGGCGGCTCCTCAACCTACGATTCCGCCACCGTCGGTGTGATGGGCGATGGATTCATTGCTCGGGACATAACCATTGAGAACGATGCGGGTCCGGGCAAGGGGCAGGCTGTTGCCCTTCGAGTCGGATCGGATCGATCTGTGGTCTTCCGATGCTCCATTATCGGTTACCAGGACACCCTCTACACTCTCTCCAAGCGTCAATTCTACAGAGAGACTGATATATATGGGACCGTAGACTTCATTTTCGGAAACTCCGCGGTTGTCTTCCAGAGCTGCAACCTTAACGCCAGAAAATCCAGCAATAACAACTTCGTGACGGCCCAGGGCCGGGAGGATCCCAATCAGAACACCGGAATCTCGATACATAACTGCAAGATCACGACAGAGGGGTCCACCACGTATCTTGGCCGACCCTGGAAGAAGTATTCCAGAACTGTGATCATGCAGTCATACTTGGATGGCTCAATTCCCCCTTCCGGGTGGTATCCCTGGTCTGGAAGCTTTGCCCTGAGCACATTGTTTTACGGCGAGTACATGAATGCAGGGCCTGGGGCGTCAACGTCCGGGCGGGTCAAGTGGGGTGGGTACCAGGGTGAACTCACGGCCAGTGTCGCTCAAGAGTTCACTGTTGGGGAATTCATATCTGGGAACGCCTGGCTGCCCTCGACTGGGGTATCTTTCGATTCAGGGCTGATTAATTAG 1662 0.5367 MFHQRPSSSHGGTPSKHLSWGCTIFLVLALTTAVSGLASSSHTSTVPKASMEAIVSAACKATFYQTACQSALLSSTNGAVPQTQADLFDLSVQFSLNQARSARAHVHDLRLLDHKTQIVRGTDDCMELLDDTLDQLTNVANRRKTLIEDPDDVQTWLSAALTNQATCLESIQTYQTGGQNGLMRPMAQNLTYSISNSLALHMSTRPSKEAQRTNTAGHHRRLLSDRFPGWVTAAERKLLEASVEEIGATAVVAKDGSGTHKTIGEALAMVVTLEGEGRTVIHVKAGTYDEGLKIPSSQKNVMLVGDGKGKTVIVGHKSYAGGSSTYDSATVGVMGDGFIARDITIENDAGPGKGQAVALRVGSDRSVVFRCSIIGYQDTLYTLSKRQFYRETDIYGTVDFIFGNSAVVFQSCNLNARKSSNNNFVTAQGREDPNQNTGISIHNCKITTEGSTTYLGRPWKKYSRTVIMQSYLDGSIPPSGWYPWSGSFALSTLFYGEYMNAGPGASTSGRVKWGGYQGELTASVAQEFTVGEFISGNAWLPSTGVSFDSGLIN* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1287 553 ProSitePatterns Pectinesterase signature 1. 275 294 IPR018040 -
Vvi5g1287 553 PANTHER PECTINESTERASE 31 541 - -
Vvi5g1287 553 NCBIfam pectinesterase inhibitor domain 26 191 IPR006501 GO:0004857
Vvi5g1287 553 Pfam Pectinesterase 250 537 IPR000070 GO:0030599|GO:0042545
Vvi5g1287 553 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 54 200 IPR035513 -
Vvi5g1287 553 ProSitePatterns Pectinesterase signature 2. 394 403 IPR033131 -
Vvi5g1287 553 SUPERFAMILY Pectin lyase-like 247 549 IPR011050 -
Vvi5g1287 553 FunFam Pectinesterase 51 203 - -
Vvi5g1287 553 SMART PMEI_2 50 200 IPR006501 GO:0004857
Vvi5g1287 553 Pfam Plant invertase/pectin methylesterase inhibitor 54 200 IPR006501 GO:0004857
Vvi5g1287 553 CDD PMEI-like_3 57 200 - -
Vvi5g1287 553 FunFam Pectinesterase 243 551 - -
Vvi5g1287 553 Gene3D - 243 551 IPR012334 -
Vvi5g1287 553 Gene3D Invertase/pectin methylesterase inhibitor family protein 51 203 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1287 Vvi-Chr5 19871964 19874977 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1287 88 552 Carbohydrate Esterase AT3G59010 63.136 0.0 563