Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1286 ATGTGGGGCAAGAATTGGAGATCCATTAGAATGCTATCAGCTTGTCTGCCTAGCAAAAACCAGGTAACAAGTGAGAGTGTGCATGGCGCTAATCTAGCAGCAAAATGGATGAGCTGTGATGTCTGCATTGAGGAAAACAAGGTGTGCGGGTGCCAACACAGTAGTACTGAAGGCTTCAAGGGCACAGTTAATGATACTGATGTCGAACGCCATCAAGAGTCCAACAGCTCTTTTGCTCATGCTGTTATTAACATGATTGGGATGCTTATAGGTCTAGGGCAGTTATCAACTCCATATGCCTTAGAAAATGGGGGTTGGGCTTCTGCATTCCTCCTCATTGGACTAGGGATAACATGTGCATACGGTTCCCATCTACTAGGAAAATGTCTTGACAAAAATCCCAAGTCAAGAAACTACACCGACATCGGACAGCAAGCGTTTGGAACAAAAGGAAGAGTTATAGCCGCAATCTTCATCTACATGGAAATTTTTATGGCTCTTGTGTCCTACACAATCTCATTGCACGATAACTTATCGACAGTGTTTTTGGGGATGCACCTTAAGGTGCCAAGCCTCAACCTATCTACATCTCAGCTGCTAACAGTGATGGCTGTTTTAGTGGCACTTCCTAGCCTGTGGCTGAGAGATCTCTCTTCTATATCTTTCCTGTCATCAGGTGGTATTTTCATGTCACTTCTTATTTTTGCGACAGTGGCATGCACAGCCATTTCTGGAGCTGTGAAAGCAAACCAACCAATACCGGTGCTCAAGCTTGATAACATCCCTGCCATATCTGGGCTTTACATCTTTAGTTATGCTGGTCATATTGTTTTCCCTGATCTATACAAAGCCATGAAAGATCCCTCCAAGTTTACCAAGGTATCTATTGTGAGCTTCACTCTAGTCACAATGCTTTATACAACTCTAGCATTCATGGGTGCCAAATTGTTCGGCCCTGATGTCAATTCTCAAATCACTCTCAGCATGCCTCGCCATCTGACTGTTACGAAGATTGCGTTATGGGCGACTGTGTTGACACCAATGACCAAATACGCACTTGAATTTGCGCCGTTTGCGATTCAGCTTGAGCACAAGCTCCCACAGTCCATGAGTTCCAGGATGAAGATGATCATAAGGGGAAGTGTGGGCTCAATTCTGCTTCTATGTATACTAGCCCTGGCTCTTTCTGTGCCATATTTCGAATATGTTCTCAGCCTCACAGGCTCACTAGTCAGTGTCAGTATCTGCATAATTCTCCCTTCCACCTTCTACCTCAAGATTTATTGGGCTCAAGTCACTAAGCCTCTCTTGATTCTCAATGTCATCCTCATTGCGTTGGGCGCTCTTCTTGGAGTGTGTGGAACCATTTCATCTTCAAAGTCGCTCTTAAAAAGCATAGGGAGAGCTCACTGA 1413 0.4459 MWGKNWRSIRMLSACLPSKNQVTSESVHGANLAAKWMSCDVCIEENKVCGCQHSSTEGFKGTVNDTDVERHQESNSSFAHAVINMIGMLIGLGQLSTPYALENGGWASAFLLIGLGITCAYGSHLLGKCLDKNPKSRNYTDIGQQAFGTKGRVIAAIFIYMEIFMALVSYTISLHDNLSTVFLGMHLKVPSLNLSTSQLLTVMAVLVALPSLWLRDLSSISFLSSGGIFMSLLIFATVACTAISGAVKANQPIPVLKLDNIPAISGLYIFSYAGHIVFPDLYKAMKDPSKFTKVSIVSFTLVTMLYTTLAFMGAKLFGPDVNSQITLSMPRHLTVTKIALWATVLTPMTKYALEFAPFAIQLEHKLPQSMSSRMKMIIRGSVGSILLLCILALALSVPYFEYVLSLTGSLVSVSICIILPSTFYLKIYWAQVTKPLLILNVILIALGALLGVCGTISSSKSLLKSIGRAH* 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1286 470 PANTHER AMINO ACID TRANSPORTER 70 450 - -
Vvi5g1286 470 Pfam Transmembrane amino acid transporter protein 75 456 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1286 Vvi-Chr5 19817262 19818964 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1286 37 470 Amino Acid or Auxin Permease AAAP Family AT5G16740 62.014 0.0 511
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1286 - - vvi:100260071 885.174