Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1281 ATGTCGAAGTCAGCTCCAACTCTGAAAGCTTCTTATGCCCTTATCATTTTCATATTATGCTTCTTCCGTACATCCTTCTCAAGTGCAACCCATTCTGGTGACATTGAGTTATTAATCACTCTCAGAAACTCTCTTGTCCAAAGAAGAAATGTTATTCCAAGTTGGTTTGACCCAGAGATTCCACCATGCAACTGGACTGGTATAAGATGTGAGGGTTCTATGGTCCGTCGAATAGATTTATCCTGTTCTTTGTTGCCTTTGGATCTTCCATTTCCAAATCTTACTGGGGAATTGAGAAATCTAAAGCACCTTAATTTCAGCTGGTGTGCACTCACTGGTGAGATTCCTCCAAATTTTTGGAGTCTAGAAAATTTGGAGACTTTGGACCTGAGTGGCAATAGGTTGTTTGGCGTACTGCCATCGATGGTGTCTAACCTGAAAATGCTCAGAGAATTTGTGCTTGATGACAATAACTTTTCTGGCAGCTTACCCTCCACCATTGGTATGCTCGGAGAACTTACTGAGCTCTCAGTCCATGCAAACTCATTCTCTGGGAATCTTCCATCAGAACTTGGAAATCTTCAGAATTTGCAGTCCCTTGATCTTAGCCTAAATTCCTTCTCTGGAAACCTACCTTCCAGTTTAGGAAATCTTACGAGGCTCTTTTATTTTGATGCCAGTCAGAACAGATTCACTGGTCCCATTTTTTCAGAGATTGGAAATTTACAGAGGCTTCTATCACTTGATCTCTCATGGAACTCAATGACTGGACCTATACCGATGGAAGTGGGCAGATTGATCAGCATGAATTCAATTAGTGTGGGAAACAACAACTTTAATGGGGAAATACCAGAAACAATTGGCAATCTGAGAGAACTTAAGGTACTTAATGTCCAAAGTTGCAGACTGACTGGGAAAGTTCCAGAAGAAATCTCTAAGCTGACCCACTTGACTTACCTAAATATAGCGCAGAACAGTTTTGAGGGTGAATTGCCCTCAAGCTTTGGCAGGTTGACAAATCTAATTTACCTTCTTGCTGCCAATGCGGGACTTAGTGGAAGGATTCCAGGGGAATTGGGTAACTGCAAAAAGCTCAGGATTCTAAATTTATCCTTCAACTCACTGTCTGGTCCATTACCTGAAGGTCTCAGGGGGCTGGAATCTATTGATTCACTAGTACTTGATTCAAACCGCCTGTCAGGTCCAATTCCCAATTGGATTTCCGACTGGAAGCAAGTTGAGTCCATTATGTTAGCTAAAAACCTGTTTAATGGGTCACTTCCTCCCCTTAATATGCAGACCCTGACCTTACTTGATGTTAATACCAACATGCTTTCTGGTGAGCTGCCTGCAGAAATATGCAAAGCCAAATCATTGACCATTTTAGTGCTATCAGATAACTATTTCACTGGTACTATTGAGAACACCTTCAGGGGATGTTTGAGTCTCACAGATCTGTTATTGTATGGCAACAATCTCTCTGGTGGATTACCTGGTTATCTGGGAGAGCTTCAGCTGGTTACGTTGGAACTGTCAAAAAACAAGTTCTCCGGAAAAATTCCTGATCAACTGTGGGAGTCTAAAACCCTTATGGAGATATTGCTCAGCAACAATTTGCTTGCAGGTCAGCTTCCAGCTGCTCTTGCTAAAGTTTTGACATTGCAGAGGCTGCAGTTGGATAATAATTTCTTTGAAGGGACCATTCCAAGTAACATCGGAGAACTAAAAAATCTCACTAATTTGTCACTGCATGGAAACCAATTGGCTGGAGAGATCCCTTTGGAACTTTTCAATTGTAAGAAGTTAGTATCCCTGGATCTGGGTGAAAACAGGCTTATGGGTTCAATTCCAAAATCTATATCACAGTTGAAACTGCTTGACAATCTGGTACTATCCAATAACCGATTCTCTGGTCCAATTCCTGAAGAGATCTGCTCTGGGTTTCAAAAGGTGCCCTTACCGGACTCTGAGTTCACCCAGCACTATGGCATGCTTGATTTATCTTATAATGAGTTTGTGGGCTCCATACCAGCAACAATTAAGCAGTGCATTGTTGTGACAGAGCTACTGTTGCAGGGAAACAAGCTTACTGGTGTCATTCCTCATGATATTTCAGGTCTGGCAAACTTAACCTTGCTTGATCTGTCTTTCAATGCTTTGACAGGGCTAGCTGTACCAAAGTTCTTTGCTTTGAGAAACCTTCAGGGGCTTATCCTTTCCCATAACCAGCTAACAGGAGCCATCCCTGTTGATCTGGGCTTGTTGATGCCAAACTTAGCCAAGCTTGATTTGTCAAACAACTGGCTAACTGGCTCACTGCCTTCATCCATATTCAGCATGAAGAGCCTGACCTATCTAGACATTAGCATGAATTCTTTCTTGGGTCCCATTTCTCTTGATTCTAGAACCAGCAGTTCTTTGTTGGTTCTAAATGCCAGCAACAACCATTTGTCTGGTACCCTTTGTGACTCGGTATCAAATCTAACATCCCTTTCTATCCTAGATCTTCACAACAACACACTCACAGGCAGCTTGCCTTCTTCACTGTCAAAACTTGTTGCCTTGACATACCTTGATTTCTCCAATAACAATTTCCAAGAGTCTATCCCATGCAATATTTGTGACATAGTAGGCCTTGCCTTTGCCAATTTCTCTGGCAACAGATTCACTGGCTATGCACCAGAGATTTGCTTGAAGGACAAACAGTGCTCAGCACTCCTACCTGTTTTCCCTTCTTCTCAGGGATACCCAGCTGTGAGAGCTCTGACCCAAGCCTCTATCTGGGCTATTGCACTGAGTGCCACTTTCATCTTCCTAGTCCTGCTCATATTTTTTCTCAGATGGAGGATGCTGAGGCAAGATACTGTAGTTCTTGACAAGGGAAAGGACAAGCTAGTGACAGCAGTTGAGCCAGAATCCACTGATGAGCTGCTGGGCAAGAAGCCAAAGGAGACACCTAGCATCAATATTGCAACATTTGAGCACTCTTTGCGGAGGATGAAGCCTTCAGACATCTTATCAGCAACTGAAAACTTCAGCAAGACTTACATTATTGGTGATGGTGGGTTTGGTACAGTTTATAGAGCCTCACTACCAGAGGGCCGAACAATTGCTGTCAAAAGGCTCAATGGAGGACGTCTGCATGGTGACCGGGAATTCCTGGCTGAAATGGAGACAATTGGAAAGGTTAAGCATGAAAACCTGGTCCCACTCCTTGGCTACTGCGTCTTTGACGATGAGAGGTTTTTAATATACGAGTATATGGAGAATGGGAGTCTTGATGTGTGGTTGAGGAACCGGGCAGATGCAGTTGAGGCACTTGACTGGCCAACCCGATTCAAGATCTGTCTGGGCTCAGCCAGAGGGTTGGCCTTTCTGCATCATGGCTTTGTTCCCCACATCATTCACAGAGACATCAAGTCAAGCAATATCTTGTTAGACAGCAAATTCGAGCCACGGGTTTCAGATTTCGGCCTAGCAAGAATCATCAGTGCATGTGAGAGCCATGTTAGTACTGTTCTTGCTGGGACCTTTGGATATATTCCTCCTGAGTACGGGCAGACCATGGTGGCAACAACCAAGGGTGATGTCTACAGCTTTGGGGTAGTGATTCTAGAGCTGGTGACAGGGAGGGCACCAACAGGTCAGGCGGATGTGGAGGGTGGGAATCTGGTGGGGTGGGTGAAGTGGATGGTGGCAAATGGGAGGGAAGATGAGGTGCTGGATCCTTACCTTTCAGCTATGACAATGTGGAAGGATGAGATGTTGCATGTGCTTTCAACAGCTCGATGGTGCACTTTGGACGATCCATGGAGGCGGCCTACCATGGTGGAGGTGGTGAAGCTGTTAATGGAGATTAATCCCGCGACTAACTGA 3876 0.4425 MSKSAPTLKASYALIIFILCFFRTSFSSATHSGDIELLITLRNSLVQRRNVIPSWFDPEIPPCNWTGIRCEGSMVRRIDLSCSLLPLDLPFPNLTGELRNLKHLNFSWCALTGEIPPNFWSLENLETLDLSGNRLFGVLPSMVSNLKMLREFVLDDNNFSGSLPSTIGMLGELTELSVHANSFSGNLPSELGNLQNLQSLDLSLNSFSGNLPSSLGNLTRLFYFDASQNRFTGPIFSEIGNLQRLLSLDLSWNSMTGPIPMEVGRLISMNSISVGNNNFNGEIPETIGNLRELKVLNVQSCRLTGKVPEEISKLTHLTYLNIAQNSFEGELPSSFGRLTNLIYLLAANAGLSGRIPGELGNCKKLRILNLSFNSLSGPLPEGLRGLESIDSLVLDSNRLSGPIPNWISDWKQVESIMLAKNLFNGSLPPLNMQTLTLLDVNTNMLSGELPAEICKAKSLTILVLSDNYFTGTIENTFRGCLSLTDLLLYGNNLSGGLPGYLGELQLVTLELSKNKFSGKIPDQLWESKTLMEILLSNNLLAGQLPAALAKVLTLQRLQLDNNFFEGTIPSNIGELKNLTNLSLHGNQLAGEIPLELFNCKKLVSLDLGENRLMGSIPKSISQLKLLDNLVLSNNRFSGPIPEEICSGFQKVPLPDSEFTQHYGMLDLSYNEFVGSIPATIKQCIVVTELLLQGNKLTGVIPHDISGLANLTLLDLSFNALTGLAVPKFFALRNLQGLILSHNQLTGAIPVDLGLLMPNLAKLDLSNNWLTGSLPSSIFSMKSLTYLDISMNSFLGPISLDSRTSSSLLVLNASNNHLSGTLCDSVSNLTSLSILDLHNNTLTGSLPSSLSKLVALTYLDFSNNNFQESIPCNICDIVGLAFANFSGNRFTGYAPEICLKDKQCSALLPVFPSSQGYPAVRALTQASIWAIALSATFIFLVLLIFFLRWRMLRQDTVVLDKGKDKLVTAVEPESTDELLGKKPKETPSINIATFEHSLRRMKPSDILSATENFSKTYIIGDGGFGTVYRASLPEGRTIAVKRLNGGRLHGDREFLAEMETIGKVKHENLVPLLGYCVFDDERFLIYEYMENGSLDVWLRNRADAVEALDWPTRFKICLGSARGLAFLHHGFVPHIIHRDIKSSNILLDSKFEPRVSDFGLARIISACESHVSTVLAGTFGYIPPEYGQTMVATTKGDVYSFGVVILELVTGRAPTGQADVEGGNLVGWVKWMVANGREDEVLDPYLSAMTMWKDEMLHVLSTARWCTLDDPWRRPTMVEVVKLLMEINPATN* 1292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1281 1291 FunFam serine/threonine-protein kinase BRI1-like 2 973 1087 - -
Vvi5g1281 1291 FunFam Leucine-rich repeat receptor protein kinase EMS1 189 282 - -
Vvi5g1281 1291 Pfam Protein kinase domain 1014 1280 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g1281 1291 FunFam Uncharacterized protein 431 754 - -
Vvi5g1281 1291 SUPERFAMILY Protein kinase-like (PK-like) 987 1284 IPR011009 -
Vvi5g1281 1291 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1134 1146 IPR008271 GO:0004672|GO:0006468
Vvi5g1281 1291 Gene3D Phosphorylase Kinase; domain 1 974 1087 - -
Vvi5g1281 1291 FunFam Nuclear pore complex protein NUP107 31 188 - -
Vvi5g1281 1291 PANTHER LEUCINE RICH REPEAT KINASE 2 730 1287 - -
Vvi5g1281 1291 Pfam Leucine Rich repeats (2 copies) 757 798 IPR025875 -
Vvi5g1281 1291 Pfam Leucine rich repeat 686 744 IPR001611 GO:0005515
Vvi5g1281 1291 Pfam Leucine Rich Repeat 124 146 IPR001611 GO:0005515
Vvi5g1281 1291 Pfam Leucine Rich Repeat 100 122 IPR001611 GO:0005515
Vvi5g1281 1291 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 801 893 - -
Vvi5g1281 1291 ProSiteProfiles Protein kinase domain profile. 1012 1290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g1281 1291 FunFam Leucine-rich repeat receptor protein kinase MSL1 311 430 - -
Vvi5g1281 1291 Gene3D Ribonuclease Inhibitor 310 430 IPR032675 -
Vvi5g1281 1291 Gene3D Ribonuclease Inhibitor 31 309 IPR032675 -
Vvi5g1281 1291 Gene3D Ribonuclease Inhibitor 755 912 IPR032675 -
Vvi5g1281 1291 SUPERFAMILY L domain-like 30 305 - -
Vvi5g1281 1291 Gene3D Ribonuclease Inhibitor 431 754 IPR032675 -
Vvi5g1281 1291 SUPERFAMILY RNI-like 210 652 - -
Vvi5g1281 1291 SMART LRR_typ_2 314 338 IPR003591 -
Vvi5g1281 1291 SMART LRR_typ_2 146 170 IPR003591 -
Vvi5g1281 1291 SMART LRR_typ_2 707 730 IPR003591 -
Vvi5g1281 1291 SMART LRR_typ_2 575 599 IPR003591 -
Vvi5g1281 1291 SMART LRR_typ_2 852 876 IPR003591 -
Vvi5g1281 1291 SMART LRR_typ_2 731 755 IPR003591 -
Vvi5g1281 1291 SMART LRR_typ_2 756 780 IPR003591 -
Vvi5g1281 1291 SMART LRR_typ_2 623 647 IPR003591 -
Vvi5g1281 1291 SMART LRR_typ_2 122 145 IPR003591 -
Vvi5g1281 1291 SMART LRR_typ_2 194 218 IPR003591 -
Vvi5g1281 1291 SMART LRR_typ_2 828 851 IPR003591 -
Vvi5g1281 1291 SMART LRR_typ_2 98 121 IPR003591 -
Vvi5g1281 1291 FunFam Leucine-rich repeat receptor-like protein kinase 1088 1291 - -
Vvi5g1281 1291 SUPERFAMILY L domain-like 657 895 - -
Vvi5g1281 1291 Gene3D Transferase(Phosphotransferase) domain 1 1088 1291 - -
Vvi5g1281 1291 Pfam Leucine rich repeat N-terminal domain 33 70 IPR013210 -
Vvi5g1281 1291 SMART serkin_6 1012 1290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g1281 1291 ProSitePatterns Protein kinases ATP-binding region signature. 1018 1040 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1281 Vvi-Chr5 19746230 19750105 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1281 63 751 Receptor kinase-like Gene Family AT5G07280 33.820 4.45e-94 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Vvi5g1281 Pkinase 5.5e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1281 - - vri:117913854 2495.69