Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1278 ATGATGAAGATGAAGAAGATGGGGTTGATTCCGCTGCTTCTTTCCTTGATGATGTACACAGCTCTTTTTCATGGTTGCATGGCCAACGAGGACGTCCCAATTCAAATCAACGACGATGTTTTAGGCCTCATCGTCTTCAAGTCAGGCCTCCATGACCCCTCTTCACGCCTGGACTCATGGAGCGAAGACGATGACTCCCCGTGTTCCTGGGAATTTGTACAGTGCAATCCTAGCACAGGCAGGGTCTCAGAGGTGTCCGTTGATGGTTTGGGGTTGTCAGGGAAGATTGGAAGAGGGCTTGAGAAGTTGCAGAACTTGAAGGTACTGTCCTTGTCGTTTAACAATTTTTCTGGTAGTATAAGTCCAGAGTTGGCCCTCATCACTGGCCTTGAAAGGCTTAATCTTAGTCACAACAGCCTTTCAGGCCGCATACCTTCTTCTCTATCAAACATGACTTCTATAAGGTTTCTCGATCTCTCCCATAATTCACTTGCAGGACCTATCCCTGATGAAATGTTTGAAAACTATTCATCGCTAAGATCCCTTTCTCTATCAATGAATTTCCTGGAAGGGCCAATTCCTAGTGCACTGCTGAGGTGCACAACTTTGAGTAACCTCAACCTCTCCAGCAACCAGTTTTCGGGTAACTTGGATTTTTCTTCTGGGATTTGGACATTGAATAGGCTCCGAACGTTGGATCTTTCACACAACGTATTTTCTGGGTCTGTGCCGGATGGGGTTGCGGCGATACATAACTTGAAAGAGCTGCAATTACAGGGAAATCGCTTCTCTGGACCGCTACCTGTTGACATTGGACTGTGCCCCCACCTGAGGAGGTTGGATTTCTGCCATAATTTATTCACGGGATCGCTTCCAGACTCGCTCCAGAGGCTGAACTCTCTGGTTTTTTTTGGTGTATCAAACAACTTGTTAGCTGGGGACTTCCCTCAGTGGATTGGTAGTATGAGCAGTGTGGAGTACGTTGATTTCTCGGGGAATGGCTTCACGGGAAGCCTCCCAGCATCAATGGGTAACCTGAAATCACTGCAGTTTCTGAGCTTATCTGATAACAGACTAACTGGAAGTATTCCAGGGTCACTGTTTTACTGTCCCAAGCTATCAGTGATCCGGTTGAGAGGTAATGGCTTCAGTGGAAGCATACCTGAGGGCCTGTTTGATCTAGGTCTGGATGAAGTAGACTTGTCGGGGAACGAGCTAGAAGGCCCGATCCCACCAGGTTCAAGCAGGCTCTTTGAATCTCTTCACTCCTTGGACTTGTCGAGGAACAAGCTTACAGGAAGCATCCCTGCAGAAATCGGTCTTTTCTCAAGCTTAAGATACTTGAATTTATCATGGAACAGTCTCCGTTCCAGGATGCCACCAGAACTGGGGTACTTTCAGAACCTGACTGTGCTAGATCTTCGGAACACTTTTTTATTCGGGTCGATCCCGGGTGACATATGCGACTCAGGGAGTCTGGGCATTCTGCAGCTGGATGGAAATTCCTTGACTGGACCCATCCCGGATGAGTTTGGAAACTGTTCATCTCTATACTTGCTGAGCATGTCCCATAATGAATTAAATGGTTCCATTCCCAAGTCCTTTGCAATGTTGAAGAAGCTGGAGATTCTGAGGCTAGAGTTCAATGAACTGAGCGGGGAGATACCAAGGGAGCTTGGCAGTTTGGAGAATCTTCTTGCTGTTAATGTTTCTTACAACAGACTGATTGGGAGGCTTCCAGTTGGGGGCATATTTCAAAGCTTGGATCAAAGTGCATTGCAGGGAAATTTGGGAATTTGTTCACCCTTGCTGAAGGGACCATGTAAGCTGAATGTATCAAAGCCGTTGGTCCTTGACCCTTACGACTTTGGCAAGCCCATTAATGGTCAGAACCGAAGAAATGAATCTACTACAACTCCTATGCGATTCAGGCATCACATGTTCCTCAGTGTTTCAGCAATTATAGCCATCACTGCTGCTGCCTTTATTCTGATCGGGGTGGTAGTTATCAGTCTGCTAAATGTATCCGCCCGGAGGAGGCTTGCCTTCATCGATACTGCGTTGGAGAGCATGTGCTCAAGCTCATCGCGGTCTGGGAGTCCTCCGACCGGGAAGCTCATTCTTTTCGATTCAAGGGCATCCCAGGATTGGATCGCCAATCCTGAAAACCTTCTCAACAAAGCCGCTGAGATCGGCGGTGGAGTTTTTGGAACTGTATACAAGGTTTCTTTAGGAGGGGGGGCGAGAATGGTAGCCATAAAAAAGCTTGTAACTTCGAATATAATCCAGTATCCAGAAGACTTCGACAGGGAAGTTCGGATCCTTGGGAAAGCTAGGCACCAGAACCTGATATCCCTGAAAGGATACTACTGGACTCCTCAGCTGCAGCTCCTGGTTACAGATTATGCGCCTAATGGGAGCTTACAGGCGAGACTCCATGAAAGGCCTCCAACTACACCACCTCTTTCCTGGCCAAATCGGTTCAGAATAATCCTAGGGACTGCGAAGGGGCTTGCCCACTTGCACCATTCTTTCCGGCCACCCATCATCCACTACAATCTGAAACCAAGCAACATTTTACTTGATGAGAACTGCAATCCGATGATATCGGATTATGGACTAGCAAGGCTATTGACAAAGCTGGACAAGCATGTAATAAGCAGCAGGTTTCAGAGTGCATTAGGGTATGTGGCACCAGAACTAGCATGCCAGAGCTTGAGGGTGAACGAGAAATGTGATATCTATGGCTTTGGAGTGATGATCCTTGAGATAGTTACTGGTAGGAGGCCAGTGGAATATGGAGAAGACAATGTGGTGATACTGAACGATCATGTCCGGGTACTGCTTGAGCAAGGGAACGTGTTGGAGTGTGTGGACCCGAGCATGAACGAGTACCCAGAAGAGGAGGTGTTGCCAGTTCTGAAGTTGGCCCTGGTATGCACTTCTCAGATACCTTCAAGCAGGCCTACCATGGCGGAAGTGGTGCAGATACTTCAGGTCATCAAGACCCCAATTCCACAACGGATGGAAGCCTTCTAA 3039 0.4765 MMKMKKMGLIPLLLSLMMYTALFHGCMANEDVPIQINDDVLGLIVFKSGLHDPSSRLDSWSEDDDSPCSWEFVQCNPSTGRVSEVSVDGLGLSGKIGRGLEKLQNLKVLSLSFNNFSGSISPELALITGLERLNLSHNSLSGRIPSSLSNMTSIRFLDLSHNSLAGPIPDEMFENYSSLRSLSLSMNFLEGPIPSALLRCTTLSNLNLSSNQFSGNLDFSSGIWTLNRLRTLDLSHNVFSGSVPDGVAAIHNLKELQLQGNRFSGPLPVDIGLCPHLRRLDFCHNLFTGSLPDSLQRLNSLVFFGVSNNLLAGDFPQWIGSMSSVEYVDFSGNGFTGSLPASMGNLKSLQFLSLSDNRLTGSIPGSLFYCPKLSVIRLRGNGFSGSIPEGLFDLGLDEVDLSGNELEGPIPPGSSRLFESLHSLDLSRNKLTGSIPAEIGLFSSLRYLNLSWNSLRSRMPPELGYFQNLTVLDLRNTFLFGSIPGDICDSGSLGILQLDGNSLTGPIPDEFGNCSSLYLLSMSHNELNGSIPKSFAMLKKLEILRLEFNELSGEIPRELGSLENLLAVNVSYNRLIGRLPVGGIFQSLDQSALQGNLGICSPLLKGPCKLNVSKPLVLDPYDFGKPINGQNRRNESTTTPMRFRHHMFLSVSAIIAITAAAFILIGVVVISLLNVSARRRLAFIDTALESMCSSSSRSGSPPTGKLILFDSRASQDWIANPENLLNKAAEIGGGVFGTVYKVSLGGGARMVAIKKLVTSNIIQYPEDFDREVRILGKARHQNLISLKGYYWTPQLQLLVTDYAPNGSLQARLHERPPTTPPLSWPNRFRIILGTAKGLAHLHHSFRPPIIHYNLKPSNILLDENCNPMISDYGLARLLTKLDKHVISSRFQSALGYVAPELACQSLRVNEKCDIYGFGVMILEIVTGRRPVEYGEDNVVILNDHVRVLLEQGNVLECVDPSMNEYPEEEVLPVLKLALVCTSQIPSSRPTMAEVVQILQVIKTPIPQRMEAF* 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1278 1012 Gene3D Phosphorylase Kinase; domain 1 709 803 - -
Vvi5g1278 1012 SMART LRR_typ_2 442 466 IPR003591 -
Vvi5g1278 1012 SMART LRR_typ_2 103 126 IPR003591 -
Vvi5g1278 1012 SMART LRR_typ_2 538 562 IPR003591 -
Vvi5g1278 1012 SMART LRR_typ_2 226 249 IPR003591 -
Vvi5g1278 1012 SMART LRR_typ_2 151 175 IPR003591 -
Vvi5g1278 1012 SMART LRR_typ_2 250 274 IPR003591 -
Vvi5g1278 1012 SMART LRR_typ_2 127 150 IPR003591 -
Vvi5g1278 1012 SMART LRR_typ_2 346 370 IPR003591 -
Vvi5g1278 1012 SMART LRR_typ_2 418 441 IPR003591 -
Vvi5g1278 1012 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase At3g28040 196 292 - -
Vvi5g1278 1012 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 36 195 - -
Vvi5g1278 1012 SUPERFAMILY RNI-like 232 587 - -
Vvi5g1278 1012 Pfam Leucine rich repeat 493 551 IPR001611 GO:0005515
Vvi5g1278 1012 Pfam Leucine rich repeat 105 164 IPR001611 GO:0005515
Vvi5g1278 1012 Gene3D Ribonuclease Inhibitor 483 610 IPR032675 -
Vvi5g1278 1012 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 35 998 - -
Vvi5g1278 1012 Gene3D Ribonuclease Inhibitor 37 191 IPR032675 -
Vvi5g1278 1012 FunFam Inactive leucine-rich repeat receptor-like protein kinase 319 611 - -
Vvi5g1278 1012 Pfam Protein kinase domain 727 996 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g1278 1012 ProSitePatterns Protein kinases ATP-binding region signature. 731 755 IPR017441 GO:0005524
Vvi5g1278 1012 ProSiteProfiles Leucine-rich repeat profile. 420 442 IPR001611 GO:0005515
Vvi5g1278 1012 SUPERFAMILY L domain-like 84 292 - -
Vvi5g1278 1012 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 719 802 - -
Vvi5g1278 1012 Gene3D Ribonuclease Inhibitor 291 392 IPR032675 -
Vvi5g1278 1012 Gene3D Ribonuclease Inhibitor 393 482 IPR032675 -
Vvi5g1278 1012 Gene3D Ribonuclease Inhibitor 192 290 IPR032675 -
Vvi5g1278 1012 CDD STKc_IRAK 731 999 - -
Vvi5g1278 1012 Pfam Leucine rich repeat N-terminal domain 37 76 IPR013210 -
Vvi5g1278 1012 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 803 1007 - -
Vvi5g1278 1012 Gene3D Transferase(Phosphotransferase) domain 1 804 1009 - -
Vvi5g1278 1012 ProSiteProfiles Leucine-rich repeat profile. 348 370 IPR001611 GO:0005515
Vvi5g1278 1012 ProSiteProfiles Protein kinase domain profile. 725 1001 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g1278 1012 SUPERFAMILY Protein kinase-like (PK-like) 717 1002 IPR011009 -
Vvi5g1278 1012 Pfam Leucine Rich Repeat 444 461 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1278 Vvi-Chr5 19716928 19720061 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1278 3 1012 Receptor kinase-like Gene Family AT3G28040 63.761 0.0 1262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Vvi5g1278 Pkinase 1.5e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1278 - - vvi:100251509 1974.13