Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1276 ATGATAACATTGATGAGGACGAAAGCAGAAATTAGGGCAGATCCTGACCGTCAAAGCTCATCATCGCCGTCAACCATGTTGACCGGACGAGAGAGCTTGATCCGATTGATCGGGAAACGGAGGAGGTTCCTCCCCAACCGTCAATCTCTTCTCTCAGCTCCAATCGAGAGTACCTTGTCTCTCAGCGGAGATGAAAATGGCGGAATGTTGGAGCGAACAGCGGGCGTTTCGGGTGAAACGACGTCGTCTAAGGTTGATTGGGTTCCTTGCCCTGTTTGTGGAAGCACTATTCGCGGTGAAGATTACATGATAAATTCTCATCTAGATGCATGTCTAGCTAGAGGAACCAAGCGGAAGTTGACCCAACGCACTCTTCTTCAATTAAACTTCTGCTCAAGATCAATGGATAAACTTGACTCCGGTGAATCAAAACACTTGGAGAACAGTGGGGTTCTGAAGGCTCCTGATAACAATCTTGTACGGAGTACCACTCCTAAATTTTCCTATTTGGGTGCATTTGAGGAAAATGATAATAAACAATTCAAATTGGACATTCACTTAGATTCTGTCATGCGTAATTACATAGATAGTTCAGCCGAAAATTTAATCAATGATGATACGACCAGCTATGATACCAGTTCCAATTCCCCTTCATTGCTCCCTAAAGATGAGATGCCTAAACATGATATAACTGTAGCTATGGACAACCTATCTGGGGTGACTCTTGAAACTTTTATTGTTGGTCGCAAGTTTAGTGATGAAGAGGAGTTAAATATTGGGGCTAGCATCTCTCTTCTGAGAGACCCTGATAATGTTAAGGACCCCAATGCTATTAAGGTCCTTTCTACAGCTTCAGGATGCAGTAAAGTGCTTGGTTTTCTTCCTCGAGAGTTAGCTCAATACCTCTCTCCCTTGATTGAGAAATACTGCATGAACTTTGAGGGATGTGTTACTTCTGTTCCAAAACATTCTCTTGATGTTGTTCCGATCCAGATTGTGAACCAAATAATGATACCATGTGGTGAAAAAGAATTTGATGATCTAGAGGCTTTCAGATTCTTATGGAAACGTGTTCTTCAGACTGTTGAGTCTGCAAAAACTTGTCCACCCAGCATTGCAAAATATCAGCGGAACTTTTGTTTTTTAATTCAGGAGGTTTTAGCAAGTAATCCACACCTCTTCACAGATGACGAGAAAATCTTCCTGGGATCTTTCACTTCACTCTCAGATGACTGTCAGAGAATTTTTGTTCGATTATATACAAGAAAAGGGCCATGGTTTCGGATGTGTAATATTTCCTACCCAGAAGTATTGGATTCTAAACAAGCTGTCAGGGGACTTTCTGATGCAGGTTATATTTGTTCCTCTCAGTCCATGATTGAGCCACATGATAATGGTGACATGAAGGAGGTTTTGAATTTGCTCACTGTTTCTGAGCTACGTGAAATTTCATCTGCAGTCATGAAGCTTCAGCATTGCCATCATGGTACAAGAAAGCAGGATCTTATTGCCTCACTTCTTTCTTCTTATGAAGATGGATTATGCCCACTCCTACAAAGAGCAATTTTGAACAAAACAGGAACGTGTGTTCGGATTTCTTGTAAAGCCGAGTCCCTTGTCTGGCGTGCTCTGAGGCTCTTCTTCCTTAATGGAGAGCAGGATCTATCAGCATTTCTACTAGTTGATTTGGGAATAGTCAAGTATCCAACTTATAACTGCATAATTTCTGATCAGATCTTCCCAGGCTTGAATGATCTGCTTGCTTATGAAGAGGCCATTGAAGTTGCACAAATAATGGATGAAGCTCTTGATGACAAGAACAGTGGATTGGTGTTAAGATGCATTAGTATATCCAACTCCCGCCTATTCATTTCCTGTTCAAAGTCAACTCAATCTTCAGCTTCTGAATCAGCAGCTACATTCCTTTCATGCCTTTCAGCATCATGGGTATACTCGAAAGTGGTCTTGTTGGGAATTTCCTTTCTCGAGCGTGAGCGCAGGTACGATGATGCAGTACATTTACTGAAGCGTCTGCTGGATGGTTTTACTTGCGATGGAAGAAGAGGATATTGGACCTTGAGGTTGTCAGTTGATTTGGAGCATTTAGGACGTCTCAATGAGAGCCTTTCAGTTGCTGAAGATGGATTGCTAGATCCATGGGTTCGTGCTGGTTCAAGAATGGCACTACAAAGGCGAGTTCTTCGCTTGGGAAAACCACCAAGGCGCTGGAAAACTCCTTGCTATTCAGAGGCCATCAAGAGGAAGATCATTGAAGTTCATGTTCAAGGTAGACCTTTGAATTGTGAAACTGGGATGAAAAGCCGTTTTTATGGTGAAGATGGAGAGCAATGTGGAGTAGAGCAACTTGCTCTGCAGTATTATGCTGGGGAAGGAGGTGGTTGGCAGGGTGTTCATACAGAGAGTGGCATTTGGTTGACCATATTTGGCCTTCTGATGTGGGATATTATTTTTGCTGATGTACCAAATGTCTTCCACACCAGGTTTCAGACTGCTCCACTGGATTTGGAGACACAGAACTTTTATGTAATGAGGAAGAGTCTCATAGAATCCCACCTGGAGAAAATTAATAGCGACATGGCTGAGGAAATCCTCATCACTTCATGGGAATCGCATGTTGGAGTAGCTTGCAGAGGAGTCAATTGGGATCGTCATTCCTTGTCTGAGCTTCGTGCAGCTGTTACTTGCATTGGGGGCCCTTGTTTGGCCTCCATCTGCCGACATTTGGCTCAAGATTATCGGAGCTGGTCCAGTGGAATGCCAGACCTGTTGCTATGGCGCTTCCATGAAGATTACAAAGGTGAAGCCAAGCTAGTTGAAGTCAAAGGCCCCAGAGATCGACTCTCTGAACAGCAGCGAGCATGGCTGCTGCTTTTAATGGACTATGGCTTCAATGTAGAGGTGTGCAAAGTGGGCCCTGCATCCAAATGA 2949 0.4344 MITLMRTKAEIRADPDRQSSSSPSTMLTGRESLIRLIGKRRRFLPNRQSLLSAPIESTLSLSGDENGGMLERTAGVSGETTSSKVDWVPCPVCGSTIRGEDYMINSHLDACLARGTKRKLTQRTLLQLNFCSRSMDKLDSGESKHLENSGVLKAPDNNLVRSTTPKFSYLGAFEENDNKQFKLDIHLDSVMRNYIDSSAENLINDDTTSYDTSSNSPSLLPKDEMPKHDITVAMDNLSGVTLETFIVGRKFSDEEELNIGASISLLRDPDNVKDPNAIKVLSTASGCSKVLGFLPRELAQYLSPLIEKYCMNFEGCVTSVPKHSLDVVPIQIVNQIMIPCGEKEFDDLEAFRFLWKRVLQTVESAKTCPPSIAKYQRNFCFLIQEVLASNPHLFTDDEKIFLGSFTSLSDDCQRIFVRLYTRKGPWFRMCNISYPEVLDSKQAVRGLSDAGYICSSQSMIEPHDNGDMKEVLNLLTVSELREISSAVMKLQHCHHGTRKQDLIASLLSSYEDGLCPLLQRAILNKTGTCVRISCKAESLVWRALRLFFLNGEQDLSAFLLVDLGIVKYPTYNCIISDQIFPGLNDLLAYEEAIEVAQIMDEALDDKNSGLVLRCISISNSRLFISCSKSTQSSASESAATFLSCLSASWVYSKVVLLGISFLERERRYDDAVHLLKRLLDGFTCDGRRGYWTLRLSVDLEHLGRLNESLSVAEDGLLDPWVRAGSRMALQRRVLRLGKPPRRWKTPCYSEAIKRKIIEVHVQGRPLNCETGMKSRFYGEDGEQCGVEQLALQYYAGEGGGWQGVHTESGIWLTIFGLLMWDIIFADVPNVFHTRFQTAPLDLETQNFYVMRKSLIESHLEKINSDMAEEILITSWESHVGVACRGVNWDRHSLSELRAAVTCIGGPCLASICRHLAQDYRSWSSGMPDLLLWRFHEDYKGEAKLVEVKGPRDRLSEQQRAWLLLLMDYGFNVEVCKVGPASK* 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1276 982 MobiDBLite consensus disorder prediction 1 27 - -
Vvi5g1276 982 Gene3D - 909 978 IPR011856 GO:0003676
Vvi5g1276 982 ProSiteProfiles Zinc finger UBZ4-type profile. 87 116 IPR006642 GO:0003677|GO:0006281
Vvi5g1276 982 MobiDBLite consensus disorder prediction 205 224 - -
Vvi5g1276 982 PANTHER FANCONI-ASSOCIATED NUCLEASE 1 29 980 IPR033315 GO:0004518|GO:0036297
Vvi5g1276 982 Pfam VRR-NUC domain 864 977 IPR014883 GO:0016788
Vvi5g1276 982 MobiDBLite consensus disorder prediction 205 220 - -
Vvi5g1276 982 SMART c2hc_5 87 112 IPR006642 GO:0003677|GO:0006281
Vvi5g1276 982 FunFam E3 ubiquitin-protein ligase RAD18 84 115 - -
Vvi5g1276 982 Gene3D - 233 345 - -
Vvi5g1276 982 SMART VRR_NUC_a_2 874 979 IPR014883 GO:0016788
Vvi5g1276 982 Pfam HIRAN domain 241 325 IPR014905 GO:0003676|GO:0008270|GO:0016818
Vvi5g1276 982 CDD FAN1-like 374 982 - -
Vvi5g1276 982 Gene3D Classic Zinc Finger 83 114 - -
Vvi5g1276 982 SMART HIRAN_2 239 336 IPR014905 GO:0003676|GO:0008270|GO:0016818
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1276 Vvi-Chr5 19643825 19661734 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1276 246 350 RAD5 or RAD16-like Gene Family AT5G05130 34.286 3.00e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1276 K15363 - vvi:100261742 1949.48