Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1251 ATGCTTCACCCTCTAAACATGGCTTCTCTGGTTTCACTCTGCCTCTTATTCTCTCTCCTCACGTCCGCCCTCGCCGACGACGCCGCCGTCATGGACAACCTCCGCAAGGGCCTCAGCTCCACCCCCTCCGGCTGGACCGGCAGCGATTTCTGCAGCTGGGAAGGCATCAACTGCGGCAATACCGGCGATAGCAACGGCCGCGTCACCGCCATCAACATGGCTTCCAAGGGTCTCTCCGGCACTCTCCCTTCCGATCTCAACCAGCTCTCTCAACTCGTGACCTTGTCGTTTCAGTCTAACTCTCTCTCTGGTTCCTTGCCCTCTCTCGCTAACCTCCAGTTTCTTCAAGATATCTACCTCAACAGCAACAATTTCACCTCCATCGACAAGGATTTCTTCACCAATCTGACGAGTTTGCAGACTGTGAGCCTCGGCGAGAACCCCGATCTGGCGCCGTGGTCGATCCCAGATGGGTTGAGCCAGTCCAAGAGTCTGGCTATCTTCTATGCTAGCAATGCTAACATTGAAGGGTCCATACCAGATTGGTTCGGTTCGATGCCGAGTCTCAACGAACTGAGGCTGTCCTACAACAATCTCAATGGGTCTCTTCCATCTTCTCTGCCTGGGACCAGCATCCAAAAGCTGTGGATGAATAATCAGCAAAGTGGGCTTTCGGGCACGATCGATGTGTTGGCAGCCATGCCCGATCTAAGACAAGTGTGGCTGCAAGCGAATGCCTTCACTGGGCCCATCCCGGACCTGTCAAATTGCACCCAGTTGTTTGATTTGCAGCTTCGGGACAATCAGTTCACTGGTATTGTGCCTTCTTCGTTGACAAGTTTACCTAAATTGGTTAACATTACTTTGAAAAACAACAAATTACAAGGTCCTGTACCCGAGTTTTCTACTGGTGTTAACGTCGAACTAGATAATAATAAGTTTTGTAGGACGTCTGTTGGACCTTGTGATAGTCAGGTTACTACATTGCTTGAGGTTGCTGGGGCTTTAGGGTATCCTACAACCTTGGCTGACTCCTGGGAAGGGAACGATGCGTGCAACCAATGGGCGTTTATTTCATGTGATACGCAGGGGAAGAATGTGACTATTGTGAATTTTGCAAAACGGGGTTTTACGGGTACAATTTCACCAGCCTTTGCAAACCTCACATCTCTGCGGAATTTGTACTTGAACGATAATAAACTTACGGGTTCTATTCCAGAGAGCTTGACTAGTTTGACTCAGCTTCAGGTTCTTGATGTGTCAAATAATAATCTTACTGGGGGCATACCGAAATTTGGAGATGGGGTGAAGGTAACTACGACAGGCAATCTCTTACTTGGAAACGGTACAGACTCTGGAAGTGGAGATTCTCCATCTTCTGGTACCGATACTACCTCACCAAGTGGTACTCCGGCTGGGTCGCCTAATGGTTCAACCCCTTCAGCTGGTGTAATTGCTGCTATAGTTGTTGCTGTTGTCATTTTTATTGGGGTTGTGTTATTTGTGTCTTACAAATGTTACGTTAGGAAACAGCATAAGAAATTTGGCAGGGTGGACAATCCTGAAAATGGGAAGGAAATGGTGGTCAATAAGGTAATGGGAGGAATGGGTGGGTATGGTGGAGTCCCAAGTGAATTACACAGCCAGAGTAGTGGTGATCATAGTGACATTCCAGTGTTTGAAGGTGGAAATATTGCAATTTCAATCCAAGTTCTTCGACAGGTGACTAACAACTTTAGTGAAGATAATATATTGGGCAGAGGAGGGTTCGGTGTTGTTTACAAAGGCGAGTTGCATGATGGGACAAAGATTGCCGTGAAAAGGATGGAATCGGCAGCAGTGGGCACCAAAGGAATGAATGAGTTTCAGGCAGAGATTGCAGTTCTTACAAAAGTTAGGCACAGACATTTGGTTGCTCTGCTAGGTTTCTGTGTCAATGGTAATGAGAGGCTTTTGGTATATGAATACATGCCGCAGGGGACACTAGGACAGCATTTGTTTGATTGGCGTGAAAATGGGTACCCACCTTTGACTTGGAAGCAAAGGGTGACAATTGCATTGGATGTAGGAAGAGGAGTGGAATACCTTCACAGCTTAGCACAACAGAGTTTCATTCATAGAGATTTGAAACCATCCAACATACTTCTTGGAGATGACATGAGAGCTAAGGTTGCCGATTTTGGGTTGGTTAAAAATGCACCTGATGGGAAGTATTCTGTGGAGACACGGTTGGCTGGAACATTTGGATATCTTGCTCCTGAATATGCTGCTACTGGAAGAGTGACAACCAAGGTCGATGTTTATGCATTTGGAGTGGTATTGATGGAGCTGATCACTGGTAGAAAAGCTCTAGATGAGACCATGCCTGATGAAAGGTCTCATTTGGTGTCATGGTTCCGCAGGGTACTAATCAACAAGGACAACCTCCAAAAGGCTATTGACCAAACTCTAGACCCTGATGAAGAGACCTTAGCAAGCATCTGCAAGGTGGCTGAGCTGGCTGGCCATTGCACTGCTCGCGAACCATATCAGAGACCCGAGATGGGCCATGCAGTTAACATCTTGGGACCTCTCGTAGAGCAGTGGAAGCCTGTTCGCCCTGATGAAGATGAAAGCTATGGCATTGATCTCCACATGAGCCTTCCTCAAGCCCTTCAAAGATGGCAAGCAGATGAAGGTACTTCCACGATGGTTAATGATCTTTCCTACAGCCGAACCCAGTCAAGCATTCCATCAAAACCTTCTGGATTTGCTGATACATTTGATTCAATGGATTGCCGGTGA 2784 0.4727 MLHPLNMASLVSLCLLFSLLTSALADDAAVMDNLRKGLSSTPSGWTGSDFCSWEGINCGNTGDSNGRVTAINMASKGLSGTLPSDLNQLSQLVTLSFQSNSLSGSLPSLANLQFLQDIYLNSNNFTSIDKDFFTNLTSLQTVSLGENPDLAPWSIPDGLSQSKSLAIFYASNANIEGSIPDWFGSMPSLNELRLSYNNLNGSLPSSLPGTSIQKLWMNNQQSGLSGTIDVLAAMPDLRQVWLQANAFTGPIPDLSNCTQLFDLQLRDNQFTGIVPSSLTSLPKLVNITLKNNKLQGPVPEFSTGVNVELDNNKFCRTSVGPCDSQVTTLLEVAGALGYPTTLADSWEGNDACNQWAFISCDTQGKNVTIVNFAKRGFTGTISPAFANLTSLRNLYLNDNKLTGSIPESLTSLTQLQVLDVSNNNLTGGIPKFGDGVKVTTTGNLLLGNGTDSGSGDSPSSGTDTTSPSGTPAGSPNGSTPSAGVIAAIVVAVVIFIGVVLFVSYKCYVRKQHKKFGRVDNPENGKEMVVNKVMGGMGGYGGVPSELHSQSSGDHSDIPVFEGGNIAISIQVLRQVTNNFSEDNILGRGGFGVVYKGELHDGTKIAVKRMESAAVGTKGMNEFQAEIAVLTKVRHRHLVALLGFCVNGNERLLVYEYMPQGTLGQHLFDWRENGYPPLTWKQRVTIALDVGRGVEYLHSLAQQSFIHRDLKPSNILLGDDMRAKVADFGLVKNAPDGKYSVETRLAGTFGYLAPEYAATGRVTTKVDVYAFGVVLMELITGRKALDETMPDERSHLVSWFRRVLINKDNLQKAIDQTLDPDEETLASICKVAELAGHCTAREPYQRPEMGHAVNILGPLVEQWKPVRPDEDESYGIDLHMSLPQALQRWQADEGTSTMVNDLSYSRTQSSIPSKPSGFADTFDSMDCR* 928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1251 927 FunFam receptor protein kinase TMK1 657 874 - -
Vvi5g1251 927 MobiDBLite consensus disorder prediction 447 478 - -
Vvi5g1251 927 FunFam Leucine-rich repeat receptor-like kinase 324 449 - -
Vvi5g1251 927 CDD STKc_IRAK 585 858 - -
Vvi5g1251 927 FunFam Receptor-like kinase TMK4 25 320 - -
Vvi5g1251 927 SMART serkin_6 579 863 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g1251 927 PANTHER OSJNBA0070M12.3 PROTEIN 10 927 - -
Vvi5g1251 927 Gene3D Transferase(Phosphotransferase) domain 1 657 873 - -
Vvi5g1251 927 SMART LRR_typ_2 412 435 IPR003591 -
Vvi5g1251 927 SMART LRR_typ_2 112 135 IPR003591 -
Vvi5g1251 927 SMART LRR_typ_2 388 411 IPR003591 -
Vvi5g1251 927 SMART LRR_typ_2 186 214 IPR003591 -
Vvi5g1251 927 Gene3D Phosphorylase Kinase; domain 1 543 656 - -
Vvi5g1251 927 ProSiteProfiles Protein kinase domain profile. 579 859 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g1251 927 ProSitePatterns Serine/Threonine protein kinases active-site signature. 704 716 IPR008271 GO:0004672|GO:0006468
Vvi5g1251 927 SUPERFAMILY L domain-like 45 303 - -
Vvi5g1251 927 Gene3D Ribonuclease Inhibitor 24 322 IPR032675 -
Vvi5g1251 927 Pfam Leucine rich repeat N-terminal domain 323 361 IPR013210 -
Vvi5g1251 927 Pfam Leucine rich repeat N-terminal domain 26 58 IPR013210 -
Vvi5g1251 927 SUPERFAMILY L domain-like 324 431 - -
Vvi5g1251 927 FunFam receptor protein kinase TMK1 541 656 - -
Vvi5g1251 927 ProSitePatterns Protein kinases ATP-binding region signature. 585 607 IPR017441 GO:0005524
Vvi5g1251 927 MobiDBLite consensus disorder prediction 904 927 - -
Vvi5g1251 927 SUPERFAMILY Protein kinase-like (PK-like) 553 855 IPR011009 -
Vvi5g1251 927 Pfam Leucine rich repeat 384 425 IPR001611 GO:0005515
Vvi5g1251 927 Gene3D Ribonuclease Inhibitor 323 448 IPR032675 -
Vvi5g1251 927 Pfam Protein tyrosine and serine/threonine kinase 582 853 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1251 Vvi-Chr5 19047885 19051820 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1251 46 855 Receptor kinase-like Gene Family AT5G49660 29.266 5.43e-92 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Vvi5g1251 PK_Tyr_Ser-Thr 2.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1251 - - vvi:100265293 1718.75