Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1238 ATGTTTGCGGCAGAGATCGAAAAAGTGTCGACGCCTGTGTTGGTTGATAACGAAGGATCGCGGCCTGAGAAGAGGCAATCGAGCGGTGGTGGCCCCTCGATGGCAGCAACAGGGCTTTGCTTAAGCCCTGGCAATCCTACTAGATCTGATGTAAGCGACACTGGCTTTCCCATAGTTTCTTCTCCAAATCTATATCGACCTGTGGCAAGAATTGGAGCGATCCAAGTGCCTCCTCAACAGTTTGAGCCATCCTCGAAGAAAGACTATCCTCCAACAATGCTCACCCTCTCCCTCCCAAGAATTGAGACCTATGAGAACAAGTACAAATCTCCACATCTCGACTATGCTCCTCACCACAACAAGGTGGTGTCTCTAGATAATCAATCGGCTTTGACCTTCACTGTACCGAAGAATCCTGAGCCGATGACCTTTGTTGTTTTGGCCAGAGACACTCCTACAGGCAGGTCCGACAAGGTCTTCGGACGACAAAGCTCTGCCTGCGGGGCCATAGTCATTGGAATACCGGAGTGGAACGACGACGATCTCTGGGCCAGCTTCCCTTTTCGGTTCTTCTCTTCGTGTCCTCTCCGGTGA 594 0.5118 MFAAEIEKVSTPVLVDNEGSRPEKRQSSGGGPSMAATGLCLSPGNPTRSDVSDTGFPIVSSPNLYRPVARIGAIQVPPQQFEPSSKKDYPPTMLTLSLPRIETYENKYKSPHLDYAPHHNKVVSLDNQSALTFTVPKNPEPMTFVVLARDTPTGRSDKVFGRQSSACGAIVIGIPEWNDDDLWASFPFRFFSSCPLR* 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1238 197 MobiDBLite consensus disorder prediction 1 52 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1238 Vvi-Chr5 18779197 18794292 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1238 18 110 MYB Transcription Factor Family AT5G67300 48.936 2.31e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1238 K09422 - vri:117913229 325.865