Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1202 ATGGGTATCTCACGAGACTCCATGCATAAGAGGCGGGCAACTGGAGGCAAGAAGAAGGCCTGGAGGAAGAAGCGAAAGTATGAGCTTGGTCGTCAACCTGCCAATACCAAGCTATCAAGCAACAAGACAGTGAGGCGAGTTCGCGTGAGGGGAGGCAATGTGAAGTGGAGGGCCCTCAGGTTGGACACTGGGAACTATTCATGGGGTAGTGAAGCTGTCACCCGCAAAACGCGTATCTTAGATGTGGTTTATAATGCCTCGAACAATGAACTGGTCAGAACACAAACCTTGGTGAAAAGTGCAATTGTTCAGGTGGATGCAGCCCCATTCAAGCAATGGTACCTTCAGCATTATGGCGTAGACATTGGTAGGAAGAAGAAGACTACTGCTAAGAAGGAAACTACAGAGGAGGGAGAAGGTGGTGCCACAGAGGAAACAAAGAAGAGTAACCATGTTCTCCGCAAGCTTGAGAAGCGCCAACAAGATCATAGACTTGATCCTCACATTGAAGAGCAGTTTGGCAGTGGTAGATTGTTGGCTAGCATCTCTTCCCGACCAGGTCAATGTGGCAGAGCTGATGGATACATCTTGGAAGGAAAGGAACTGGAGTTCTATATGAAGAAGATTCAAAGGAAGAAAGGCAAGGGCAGTGCTGGTGCCGCCTAA 666 0.4865 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRVRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKTTAKKETTEEGEGGATEETKKSNHVLRKLEKRQQDHRLDPHIEEQFGSGRLLASISSRPGQCGRADGYILEGKELEFYMKKIQRKKGKGSAGAA* 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1202 221 MobiDBLite consensus disorder prediction 1 42 - -
Vvi5g1202 221 FunFam 40S ribosomal protein S8 32 161 - -
Vvi5g1202 221 MobiDBLite consensus disorder prediction 11 26 - -
Vvi5g1202 221 CDD Ribosomal_S8e_like 5 197 - -
Vvi5g1202 221 ProSitePatterns Ribosomal protein S8e signature. 11 30 IPR018283 GO:0003735|GO:0005840|GO:0006412
Vvi5g1202 221 MobiDBLite consensus disorder prediction 127 152 - -
Vvi5g1202 221 PANTHER 40S RIBOSOMAL PROTEIN S8 1 215 IPR001047 GO:0003735|GO:0005840|GO:0006412
Vvi5g1202 221 Gene3D - 32 161 - -
Vvi5g1202 221 Gene3D - 162 215 - -
Vvi5g1202 221 Pfam Ribosomal protein S8e 5 197 IPR022309 -
Vvi5g1202 221 NCBIfam ribosomal protein eS8 1 199 IPR001047 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1202 Vvi-Chr5 18253101 18257630 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1202 1 206 Cytoplasmic Ribosomal Protein Gene Family AT5G59240 84.466 7.39e-126 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1202 K02995 - vvi:100257147 403.29