Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1193 ATGCTCAAACCTCATAACCATTTTGGCGGGGCAGATCTCCTTCCATTTTGGCCATATCTCGAAATTGCTAATTCTGAGGCTTGGGCGGAACAGTCTAACAGGGGTTATCCCATTTACTTTGGGAAACCCTTCATCTTTTTAGCAGCTTTCAATGGCGTTCAATCATTTGGAGGGGGTATTTCACATGATTTAAGTCATCTGAAGTGCTTGAAATATTTATATTTGGATGTAAATAACCTGTCTGGTATGATTCCTCCCTTACGCTATAATTGGTCATCTGCCATTGAATTTTTTGTATCTGGCAACATTCTGTCTGGAAATTTTACTCCAAACATGAGGTTTAATTTTCCTCAACTCCGCAAGTTTTGCATAGCAGGGAATCAGTTTACCGGAATAATTCCAGATACACTATCCAATATTTCAGGACTTGAACTTTTGGATCTAGCTAACGTTCCAAATGGAGTTCTGAGTTCCTGGAATGACTCTCTGCACTTCTGCCAGTGGGAGGGGGTTACATGCAGTCACCAACTTCAGAGGGTCACAGCCTTGAGGTTGGAGAGTCAGAGATTAGCTGGTTCCTTGCCTCCTATTGAGAACTTAACATTTCTCAGAGAGTTGGAATTGTCCAACAATAACTTGCACGCAACTGACAACCATCTGTCTGGAAATTTCATGTCAAACATGAGGTTCAGTTCTCCTCAACTCTGCAAGTTTGGCAAAGCAATGAATCAGTTTACAGGAATAATTCCAGATACACTATCCAATATTTCAGGACTTGAACTTTTGGATCTAGGTGACAATCATCTAACTGGGAAAGTCCCTGATAGTTTGGGAGTGCTCAAGGATCTGTATTGGTTGACCCTTGACTTCAATAGTTCAGGAAGGGGAATGTCTGGCGATTTAAATTTTCTAAATTCTCTCACCAACATCAGCGGTTTAAGGTTAATCAATGCAGAAGGCAATCATTTTGGGGGTGTGTTACCCAACTCCATTGTCAATCTCTCAACCCAACTGCAGCAACTCGTCCTAGGAGAAAACAAAATATCTGGAAACATCCCAAAAGAGATTGGAAACCTCATCAACTTGATTCAATTCATTGCAACTTGGAATTATCTCACTGGTATCATTCCCACATCAATTGGCAAGCTTCAGAACTTAGGAGAATTGGACTTCGGTTGGAACAGGCTATCAGGTGAAGTAGTTCCAAGTGGAGGAGTTTTTAAAAATGTGAATGGGATTTCAATCACTGGGAACAAGAAGCTTTGTGGGGAAATCCCTCAACTGCATCTGCCACCATGCTTTGTTGTAGAGTCAGCAAAGCATGCCAAGGGCAAGCATCCTTCAATCAAAATTATTATAGCTATAAGCATTGCTGGTGTTTCTTGCTTGGCTTTCATTGTGGCTTCAGTTCTCCTTTATAGGAGAAACAAGACAATAATGAAGTCCTCTTCCACTTTTTTGGGATATGGGTCCTCCAGGCCAATTCAACATCGAAATCTCCTCAGGATCATAACTTCATATACAAGTTTTAATGCTCTAGTATTTGAGTTCATGCCTAATGGGAACCTAGATAGCTGGCTGCATCACGAATCCAGAAATTTAAGCTTCAGACAAAGATTAGATATTGCAATTGATGTGGCTAATGCTCTGGATTATCTTCATCACCAATTGCAGACACCAATTGTTCATGGTGATCTAAAGCCAAGCAATGTTCTTCTTGATGATGACATGGTTGCCCATGTCGGGGACTTCGGGTTAGCCAAGCTCTTTCCTGAAGCTGACGACATGCTGAGTAGTGATCAAACCAGTTCGACACTGATGATGGGATCCATCGGTTATGTCGCTCCAGGTGGCTCCATGTGGCCTCAAGGAGATGTGTACAGCTATGGCATTCTTTTCCTGGAGATGTTCAAGGGAAAGAGACCAACAGAACACATGTTTCCGGATGGTTTGAGCCTTCACAGTTTCTCGAAGATGGCATTACCAGAACGGGTGATGGAGATTGCCGATTCAAACTTGGTTGGGGAGTCAGGTGAAGCAACCAACAATATAGCAAATCACGGTGATGTGGAAGGTAGAATACAGCATTGCCTTGCCTCAATTGCGAGAATTGGAGTAGCATGTTCTGAAGAATCACCTGGTGATCGAATGGACATCAAAGACACCGTGATGGAACTGAATATCATTAAGGAAGTGTTTCTTGGGGTAGGAATCCATGGGGAGAGACATATCAGGATTAGGATGCAACTACCTGCGGAAGGAACATCTCAGCTCGGTGGTGACTGA 2286 0.4252 MLKPHNHFGGADLLPFWPYLEIANSEAWAEQSNRGYPIYFGKPFIFLAAFNGVQSFGGGISHDLSHLKCLKYLYLDVNNLSGMIPPLRYNWSSAIEFFVSGNILSGNFTPNMRFNFPQLRKFCIAGNQFTGIIPDTLSNISGLELLDLANVPNGVLSSWNDSLHFCQWEGVTCSHQLQRVTALRLESQRLAGSLPPIENLTFLRELELSNNNLHATDNHLSGNFMSNMRFSSPQLCKFGKAMNQFTGIIPDTLSNISGLELLDLGDNHLTGKVPDSLGVLKDLYWLTLDFNSSGRGMSGDLNFLNSLTNISGLRLINAEGNHFGGVLPNSIVNLSTQLQQLVLGENKISGNIPKEIGNLINLIQFIATWNYLTGIIPTSIGKLQNLGELDFGWNRLSGEVVPSGGVFKNVNGISITGNKKLCGEIPQLHLPPCFVVESAKHAKGKHPSIKIIIAISIAGVSCLAFIVASVLLYRRNKTIMKSSSTFLGYGSSRPIQHRNLLRIITSYTSFNALVFEFMPNGNLDSWLHHESRNLSFRQRLDIAIDVANALDYLHHQLQTPIVHGDLKPSNVLLDDDMVAHVGDFGLAKLFPEADDMLSSDQTSSTLMMGSIGYVAPGGSMWPQGDVYSYGILFLEMFKGKRPTEHMFPDGLSLHSFSKMALPERVMEIADSNLVGESGEATNNIANHGDVEGRIQHCLASIARIGVACSEESPGDRMDIKDTVMELNIIKEVFLGVGIHGERHIRIRMQLPAEGTSQLGGD* 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1193 761 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 518 736 - -
Vvi5g1193 761 Gene3D Transferase(Phosphotransferase) domain 1 518 733 - -
Vvi5g1193 761 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 303 400 - -
Vvi5g1193 761 ProSiteProfiles Protein kinase domain profile. 380 734 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g1193 761 ProSitePatterns Serine/Threonine protein kinases active-site signature. 561 573 IPR008271 GO:0004672|GO:0006468
Vvi5g1193 761 SUPERFAMILY L domain-like 157 433 - -
Vvi5g1193 761 Gene3D Ribonuclease Inhibitor 297 430 IPR032675 -
Vvi5g1193 761 SUPERFAMILY Protein kinase-like (PK-like) 495 726 IPR011009 -
Vvi5g1193 761 Pfam Leucine rich repeat N-terminal domain 151 174 IPR013210 -
Vvi5g1193 761 Gene3D Ribonuclease Inhibitor 152 296 IPR032675 -
Vvi5g1193 761 Gene3D Ribonuclease Inhibitor 47 151 IPR032675 -
Vvi5g1193 761 PANTHER OS04G0122200 PROTEIN 58 150 - -
Vvi5g1193 761 SUPERFAMILY L domain-like 59 151 - -
Vvi5g1193 761 SMART serkin_6 435 734 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g1193 761 Pfam Protein tyrosine and serine/threonine kinase 495 665 IPR001245 GO:0004672|GO:0006468
Vvi5g1193 761 Pfam Leucine Rich Repeat 259 280 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1193 Vvi-Chr5 17875097 17880575 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1193 58 733 Receptor kinase-like Gene Family AT3G47570 33.495 4.72e-97 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vvi5g1193 PK_Tyr_Ser-Thr 1.6e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1193 - - vvi:100249665 1229.16