Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1189 ATGGACTTGGATAATATCGAGTGTGTATCATCATCGGATGACATGGAAGAAGAGGAGATCTACCACCTTCATTACCATCATCACAATCTCAATCACAATCATGTGGTTCATCAGTTCTCGTCGAAGCCTCTTCAAAAAGGCGTCGTTCCTTCGGCGACTGCTCCGGCGACTAGCGTTCATGAATTGCTTGAGTGCCCCGTGTGCACCAATTACATGTACCCACCAATCCACCAATGTCACAATGGACACACCTTATGCTCTACCTATAAAACAAGGGTTCACAATGTTAGGATTTTTCAACCCCCAACTTTGGGAAAATCAAGAAATCTGTGCTAA 336 0.4435 MDLDNIECVSSSDDMEEEEIYHLHYHHHNLNHNHVVHQFSSKPLQKGVVPSATAPATSVHELLECPVCTNYMYPPIHQCHNGHTLCSTYKTRVHNVRIFQPPTLGKSRNLC* 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1189 111 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 48 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1189 Vvi-Chr5 17742397 17744629 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1189 41 96 C3H Transcription Factor Family AT2G41980 59.649 9.84e-16 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1189 K04506 - vvi:100252009 162.925