Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1188 ATGGAGATGCCAAGCTCTAGCTTGAGATTACAGTGGTGGTTTTTCCTTGTCAACCTCATCATTTGTATTAGTTTGCTTCGGTTGGAATCTCTTTCCAGCACGCCCACTTTTGGAAATGAAACTGATAAGCTTGCATTGCTCACCATCAAGCATTATCTGGTTGATGTTCCAAATGGAGTTCTGAGTTCCTGGAATGACTCTGCATTTCTGCCAGTGGCATGGGGTTACATTCAGTCGCTGACATCAGAGGGTCACAACGAGGGTCAAAGCTTAGGTCTGCTCCCATCCACCGTCGGCAACTCAAGTCAACTATACTACCTTGACATGGGCTACAACAATTTGGAAGGGAACATTCCTACTCACAGGAACTGCCAAAATATGGAAATTCTTTTCCTCGATCACAATAAGTTGAGTGGTAGTGTACCTGAAAATGTCACTTGTCATTTCAATCAGTTGAGATCACTCTACCTACAGCAAAACACATTCACCGGTTCTCTCCCAACAGATGTTGGTCAACTGAAAAACCTAAATCAGCTGCTTGTTTCTGACAACAACTTGTCAGGCAAAATCCCCAGGGAACTTGGCAGCTGTTCGATATTTGAGTACCTCGACATGGCAAAAAACTCTTTCCAGGGAAACATCCCTCTGTCATTTAGCTCATTGAGAGGTATTCGGTTCCTAGACCTTTCATGCAACATCTTGCCTGGAACGATTCCCAAAGAACTACATCTTCTTGGTTTGTTGAGTTTAAATCTGCCTTATAACTACCTTGAAGAGTCAGCAAAGCATGGCAAAGGGAAGCATCTTTCAACCAAAATTGTTATAGCCATAAGCATTACTGGTGTTTCTTGCTTGGCTTTCATAGTGGCTTCAGTTCTCCTCTATGGGAGAAAAACGGCTGTAATGAAGCCTTCTTCCACCTTTTTAAGATATGGATACTTGAGGGTTTCTTACAAAGAGCTCCTCAAAGCAGCTAGTGGATTTGCTTCTTCCAACTTGATTGGCATGGGAAGTTTTGGTTCCATATACAAAGGAATTCTAATTCGAGGTGAAAGACCTGTTGCAGTGAAGGTACTGAACCTTCAACACCGTGGAGCTACCAAGAGTTTCATGGCTAAGTGCAAGGTCCTCAGGAATATTCAGCTTCGGAATCTCCTTGGATTCATAACTTCATGTTCAAGTGTGGACAACAAAGTTTGTGATTTTAAGGCTCTAGTATTTGAGTTCATGCCTAATGGGAACCTAGATAGCTGGCTGTATCATGAATCTAGAAATTTAAGCTTCAGACAAAGATTGGATATCGTAATTGATGTGGCTAATGCTCTGGATTATCTTCATCACCAATGCCAGACGCCAATTGTTCATGGTGATCTAAGGCCAAGCAATGTTCTTCTTGATGATGACATGGCTGCCCATGTTGGGGACTTCGGGTTAGCCAACCTCCTTCCTGAAGCTAACGAGATTCTGAGTAGTGGTCTGTAG 1482 0.4285 MEMPSSSLRLQWWFFLVNLIICISLLRLESLSSTPTFGNETDKLALLTIKHYLVDVPNGVLSSWNDSAFLPVAWGYIQSLTSEGHNEGQSLGLLPSTVGNSSQLYYLDMGYNNLEGNIPTHRNCQNMEILFLDHNKLSGSVPENVTCHFNQLRSLYLQQNTFTGSLPTDVGQLKNLNQLLVSDNNLSGKIPRELGSCSIFEYLDMAKNSFQGNIPLSFSSLRGIRFLDLSCNILPGTIPKELHLLGLLSLNLPYNYLEESAKHGKGKHLSTKIVIAISITGVSCLAFIVASVLLYGRKTAVMKPSSTFLRYGYLRVSYKELLKAASGFASSNLIGMGSFGSIYKGILIRGERPVAVKVLNLQHRGATKSFMAKCKVLRNIQLRNLLGFITSCSSVDNKVCDFKALVFEFMPNGNLDSWLYHESRNLSFRQRLDIVIDVANALDYLHHQCQTPIVHGDLRPSNVLLDDDMAAHVGDFGLANLLPEANEILSSGL* 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1188 493 ProSiteProfiles Protein kinase domain profile. 328 493 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g1188 493 Gene3D Transferase(Phosphotransferase) domain 1 410 492 - -
Vvi5g1188 493 Pfam Protein tyrosine and serine/threonine kinase 332 484 IPR001245 GO:0004672|GO:0006468
Vvi5g1188 493 SUPERFAMILY L domain-like 41 258 - -
Vvi5g1188 493 Gene3D Ribonuclease Inhibitor 184 257 IPR032675 -
Vvi5g1188 493 ProSitePatterns Tyrosine protein kinases specific active-site signature. 453 465 IPR008266 GO:0004672|GO:0006468
Vvi5g1188 493 ProSitePatterns Protein kinases ATP-binding region signature. 334 357 IPR017441 GO:0005524
Vvi5g1188 493 Gene3D Ribonuclease Inhibitor 38 183 IPR032675 -
Vvi5g1188 493 PANTHER OS04G0122200 PROTEIN 86 484 - -
Vvi5g1188 493 SUPERFAMILY Protein kinase-like (PK-like) 307 486 IPR011009 -
Vvi5g1188 493 FunFam Leucine-rich repeat receptor protein kinase EMS1 145 240 - -
Vvi5g1188 493 Gene3D Phosphorylase Kinase; domain 1 310 409 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1188 Vvi-Chr5 17734718 17737115 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1188 67 487 Receptor kinase-like Gene Family AT3G47570 40.084 8.00e-94 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vvi5g1188 PK_Tyr_Ser-Thr 5.2e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1188 - - vvi:100258860 662.529