Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1184 ATGCGGAATAATCTCACTGGTGCCATTCCCACTTCAATTGGCAAGCTTCAGAATTTAAGAGTATTCGAGTTAAATTGGAACAGGCTATCAGGTCTGCTCCCATCCACCCTCTGCAACTCAAGTCAACTATACTACCTTGACATGGGCTACAACAATTTGGAAGGGAACATTCCTACATCTCTCAGGAACTGCCAAAATATGGAAATTCTTTTCCTCGATCACAATAAGTTGAATGGTAGTGTACCTGAAAATGTCATTGACCATTTCAATCAGTTGAGATCACTCTACCTACAGCAAAACACACTCACCGGTTCTCTTCCAGCAGATTTTGGTCAACTGAAAAATCTAAATCAGTTACTTGTTTCTGACAACAACTTGTCAGGGGAAATCCCCAGGGAACTTGGCAGCTGTTCGGTATTAGAGTATCTTGACATGGCAAGAAACTCCTTCCAGGGAAACATCCCCCTGTCCTTTAGCTCTTTGGGAGGAATTCAAATCCTAGATCTTTCGTGCAACAACTTGTCTGGAATGATTCCCAAAGAACTACAACATCTTTCCGCTTTGCTGAGTTTAAATCTGTCTTATAGCTACATTGAAGGTGAGGTTCCAAGTGGAGGAGTTTTTAAAAATGTGAGTGGGATTTCAATCACTGGGAACAAGAAGCTTTGTGGGGGAATCCCTCAACTTCAGCTGCCAGCTTGTTCTGATGTAGAGTCAGCAAAGCATGGCAAGGGGAAGCATCTTTCAACCAAAATTGTTATAGCCATAAGCATTACTGGTGTTTCTTGCCCGGCTTTCATAGTGGCTTCAGTTCTCCTCTATGGGAGAAAAAAGGCAGTAATGAAGTCTTCTTCCACTTTTTTAAGATATGGGTACTTGAGGGTTTCTTACAAAGAGCTCCTCAAGGCAACTAGTGGATTTGCTTATTCCATCTTGATTGGCATGGGAAGTTTTGGTTCCGTGTACAAAGGAATTCTAAGTCGAGGCGAAAGACCTGTTGCAGTGAAGGTACTGAACCTTCAACAGCGTGGAGCTGCCAAGAGTTTCATGGCTGAGTGCAAGGTCCTCAGGAATATTCAGCAACGGAATCTGCTTCGAATCATAACTTCATGTTCAAGTGTGGACAACAAAGGTTGTGATTTTAAGGCTCTAGTATTTGAGTTCATGCCTAATGGAAACCTAGATAGCTGGCTGCATCATGAATCCAGAAATTTAAGCTTCAGACAAAGATTGGATATCGCAATTGATGTGGCTAATGCTCTGGATTATCTTCATCACCAATGCCAGACACCAATTGTTCATGGGGATCTAAAGCCAAGCAATGTTCTTCTTGATGATGACATGGTTGCCTATGTTGGGGACTTTGGGTTAGCCAAGCTCATTCCTGAGGCCACCGAGATTTCAAGTAGTGATCAAACCAGTTCAGCCCTGCTGATGGCATCCATCGGTTATGTGGCTCCAGGTACTCTTCTTTATGTGTTTTGCACATTCCTAAAAATAACTTGTGAAGTTATTGTAAAAAAGAAAAATATATGCATGGCAGAATACGGAATAGGTGGCTCCATGTGGCCTCAAGGAGATATGTACAGCTATGGCATCCTTTTCCTGCAGATGTTGACGGGAAGGAGACCAATAGAGCACATGTTTTCGGATGGTTTGAGCCTTCACAGTTTCTCGAAGATGGCATTGCCAGAACGGGTGATGGAGATTGCCGATTCAACCTTGGTTGGGGAGTCAGGTGAAGCGATCAACAATATAGCAAATCACGGTGATATGGAAGGTAGAATGCAGGATTGCCTTGCTTCAATTGCGAGAATTGGAGTAGCATGTTCTGAAGAATCACCTGGTGGTCGAATGGACATCAAAGACGTGGTGATGGAACTGAATATCATTAAGGAAGTGTTTCTTGGGGTAGGAATCCATGGAGAGAGACATATCAGGATGCAACTACCTCCGGAAGGAACATCTCAGCTCGGTGGTGACTGA 1986 0.433 MRNNLTGAIPTSIGKLQNLRVFELNWNRLSGLLPSTLCNSSQLYYLDMGYNNLEGNIPTSLRNCQNMEILFLDHNKLNGSVPENVIDHFNQLRSLYLQQNTLTGSLPADFGQLKNLNQLLVSDNNLSGEIPRELGSCSVLEYLDMARNSFQGNIPLSFSSLGGIQILDLSCNNLSGMIPKELQHLSALLSLNLSYSYIEGEVPSGGVFKNVSGISITGNKKLCGGIPQLQLPACSDVESAKHGKGKHLSTKIVIAISITGVSCPAFIVASVLLYGRKKAVMKSSSTFLRYGYLRVSYKELLKATSGFAYSILIGMGSFGSVYKGILSRGERPVAVKVLNLQQRGAAKSFMAECKVLRNIQQRNLLRIITSCSSVDNKGCDFKALVFEFMPNGNLDSWLHHESRNLSFRQRLDIAIDVANALDYLHHQCQTPIVHGDLKPSNVLLDDDMVAYVGDFGLAKLIPEATEISSSDQTSSALLMASIGYVAPGTLLYVFCTFLKITCEVIVKKKNICMAEYGIGGSMWPQGDMYSYGILFLQMLTGRRPIEHMFSDGLSLHSFSKMALPERVMEIADSTLVGESGEAINNIANHGDMEGRMQDCLASIARIGVACSEESPGGRMDIKDVVMELNIIKEVFLGVGIHGERHIRMQLPPEGTSQLGGD* 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1184 661 SMART LRR_typ_2 89 112 IPR003591 -
Vvi5g1184 661 SMART LRR_typ_2 161 184 IPR003591 -
Vvi5g1184 661 SMART LRR_typ_2 113 137 IPR003591 -
Vvi5g1184 661 SMART LRR_typ_2 16 39 IPR003591 -
Vvi5g1184 661 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 389 492 - -
Vvi5g1184 661 SUPERFAMILY L domain-like 3 224 - -
Vvi5g1184 661 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 1 81 - -
Vvi5g1184 661 ProSitePatterns Protein kinases ATP-binding region signature. 313 336 IPR017441 GO:0005524
Vvi5g1184 661 Pfam Leucine rich repeat 140 196 IPR001611 GO:0005515
Vvi5g1184 661 Pfam Leucine rich repeat 42 102 IPR001611 GO:0005515
Vvi5g1184 661 SMART serkin_6 307 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g1184 661 Pfam Protein tyrosine and serine/threonine kinase 313 473 IPR001245 GO:0004672|GO:0006468
Vvi5g1184 661 PANTHER OS04G0122200 PROTEIN 2 632 - -
Vvi5g1184 661 FunFam LRR receptor-like serine/threonine-protein kinase EFR 278 388 - -
Vvi5g1184 661 SUPERFAMILY Protein kinase-like (PK-like) 286 629 IPR011009 -
Vvi5g1184 661 Gene3D Ribonuclease Inhibitor 1 243 IPR032675 -
Vvi5g1184 661 ProSiteProfiles Protein kinase domain profile. 307 636 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g1184 661 Gene3D Phosphorylase Kinase; domain 1 289 388 - -
Vvi5g1184 661 ProSitePatterns Serine/Threonine protein kinases active-site signature. 432 444 IPR008271 GO:0004672|GO:0006468
Vvi5g1184 661 Gene3D Transferase(Phosphotransferase) domain 1 389 635 - -
Vvi5g1184 661 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 107 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1184 Vvi-Chr5 17617371 17619434 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1184 2 636 Receptor kinase-like Gene Family AT3G47570 43.385 1.14e-161 489
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vvi5g1184 PK_Tyr_Ser-Thr 1.2e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1184 - - vvi:100258860 1230.31