Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1180 ATGCCTAATGGGAACCTAGATAGCTGGCTGCATCACGAATCCAGAAATTTAAGCTTCAGACAAAGATTAGATATTGCAATTGATGTGGCTAATGCTCTGGATTATCTTCATCACCAATTGCAGACACCAATTGTTCATGGTGATCTAAAGCCAAGCAATGTTCTTCTTGATGATGACATGATTGCCCATGTCGGGGACTTCGGGTTAGCCAAGCTCTTTCCTGAAGCTGACGACATGCTGAGTAGTGATCAAACCAGTTCGACACTGATGATGGGATCCATCGGTTATGTCGCTCCAGAATATGGACTAGGTGGCTCCATGTGGCCTCAAGGAGATGTGTACAGCTATGGCATCCTTTTCCTGGAGATGTTCACGGGAAAGAGACCAACAGAACACATGTTTCCGGATGGTTTGAGCCTTCACAGTTTCTCGAAGATGGCATTGCCAGAACGGGTGATGGAGATTGCCGATTCAAACTTGGTTGGGGAGTCAGGTGAAGCAATCAACAATATAGCAAATCACGGTGATGTGGAAGGTAGAATGCAGCATTGCCTTGCCTCAATTGCGAGAATTGGAGTAGCACGTTCTGAAGAATCACCTGGTGATCGAATGGACATCAAAGACGTGGTGATGGAACTGAATATCATTAAGGAAGTGTTTCTTGGGGTAGGAATCCATGGGGAGAGACATATCAGGATGCAACTACCTGCGGAAGGAACATCTCAGCTCGGTGGTGACTGA 741 0.4615 MPNGNLDSWLHHESRNLSFRQRLDIAIDVANALDYLHHQLQTPIVHGDLKPSNVLLDDDMIAHVGDFGLAKLFPEADDMLSSDQTSSTLMMGSIGYVAPEYGLGGSMWPQGDVYSYGILFLEMFTGKRPTEHMFPDGLSLHSFSKMALPERVMEIADSNLVGESGEAINNIANHGDVEGRMQHCLASIARIGVARSEESPGDRMDIKDVVMELNIIKEVFLGVGIHGERHIRMQLPAEGTSQLGGD* 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1180 246 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 1 218 - -
Vvi5g1180 246 ProSitePatterns Serine/Threonine protein kinases active-site signature. 44 56 IPR008271 GO:0004672|GO:0006468
Vvi5g1180 246 Gene3D Transferase(Phosphotransferase) domain 1 1 221 - -
Vvi5g1180 246 SMART serkin_6 1 221 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g1180 246 Pfam Protein tyrosine and serine/threonine kinase 1 135 IPR001245 GO:0004672|GO:0006468
Vvi5g1180 246 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 1 223 - -
Vvi5g1180 246 ProSiteProfiles Protein kinase domain profile. 1 221 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g1180 246 SUPERFAMILY Protein kinase-like (PK-like) 1 213 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1180 Vvi-Chr5 17560353 17561248 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1180 1 221 Receptor kinase-like Gene Family AT3G47580 48.035 2.23e-61 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vvi5g1180 PK_Tyr_Ser-Thr 1.6e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1180 - - vvi:100258860 452.981