Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1177 ATGGAGATGCCAAGCTCTAGCTTGAGATTACAGTGGTGGCTTTTCCTTGTCAACCTCATCATTTGTATTAGTTCGCTTAGGTTGGAATCTCTTTCCAGCACGCCCACTTTTGGAAATGAAACTGATAAGCTTGCATTGCTCACCATCAAGCATTATCTGGTTGATGTTCCAAATGGAGTTCTGAGTTCCTGGAATGACTCTGCATTTCTGCCAGTGGCATGGGGTTACATGCAGTCGCCGACATCAGAGGGTCACAACGAGGGTCAAAGCTTAGGTGACAATTATCTAACTGGCCAAGTCCCTGATAGCTTAGGAGTGCTCAAGGATCTGTATTGGTTGAACCTTGAATTCAATAATTTAGGAAGGGGCATGTCAGGCGATTTAAATTTTCCATATTCTTTGCCCAATGTCAGCAGTTTAAGACTTATCAATCTACATGCCAATAATTTCCGGGGCGTGTTACCCATCTCCATTGTTAATCGATCAACCCAACTGCAGAAGCTTATCATAGGGGGCAACAAAATATCTGGAAGCATCCCAAAAGGTATTGGAAACCTGATCAGCTTAACTGTTTTCAGTGCAATGCGGAATAATCTCACTGTGTCATTCCCACTTCAATTGGCATGCAAGCTTCAGAATTTAAGAGTATTTGACTTAAATTGGAACAGGCTATCAGGTCTGCTGCCATCCACCCTCGGCAACTCAAGTCAACTATACTACCTTGACACGGGCTACAACAATTTGGAAGGGAACCTTCCTACTTCTCTCAGGAACTGCCAAAATATGGAAATTCTTTTCCTCGATCACAATAAGTTGAGTGGTAGTGTACCTGAAAATGTCACTTGTCATTTCAATCAGTTGAGATCACTCTACCTACAGCAAAACACATTCACCGGTTCTCTTCCAACAGATGTTGGTCAACTGAAAAACCTAAATCAGCTGCTTGTTTCTGACAACAACTTGTCAGGGGAAATCCCCAGGGAACTTGGCAGCTGTTCAGTATTAGAGTACCTCGACATGGAAAAAAACTCTTTCCAGGGAAACATCCCTCTGTCATTTAGCTCATTGAGAGGTATTCGGTTCCTAGACCTTTCATGCAACGTCTTGCCTGGAACGATTCCCAAAGAACTACATCTTCTTGTGAAGGTACTGAACCTTCAACACCGTGGAGCTGCCAAGAGTTTCATGGCTGAGTGCAAGGTCCTCAGGAATATTCAGCTTCGGAATCTCCTTGGAATCATAACTTCATGTTCAAGTGTGGACAACAAAGGTTGTGATTTTAAGGCTCTAGTATTTGAGTTCATGCCTAATGGGAACCTAGATAGCTGGCTGTATCATGAATCCAGAAATTTAAGCTTCAGACAAAGATTGGATATCGCAATTGATGTGGCTATTGCTCTGGATTATCTTCATCACCAATGCCAGACACCAATTGTTCATGGTGATCTAAGGCCAAGCAATGTTCTTCTTGATGATGACATGGTTGCCCATGTTGGGGACTTCGGGTTAGCCAAGCTCCTTCCTGAAGCTAACGAGATTCTGAGTAGTGATCAAACCAGTTCGGCACTGATGATGGGATACATCGGTTATGTTGCTCCAGAATACGGATTAGGTGGCTCCATGTGGCCTCAAGGAGATGTGTACAGCTATGTCATCCTTTTGCTGCAGATGTTCACGGGAAGGAGACCAACAGAGAGCATGTTTTCAGATGGTTTGAACCTTTACACTTTCTCTAAGATGCCATTGCCAGAACGTGTAATGGAGATTGCGGATTCAAACTTGTTTAGGGAGTCAGATGAAGCAATTAGCAATGTAGGAAATCAACGTGAAACGGAAGGTAGAATGTGCCATTGCCTGGTTTCAATTGCCAGAATTGGAGTAGCATGTTCTGAAGAATCAGTTAGTGATCTAATGGACATCGAAGATGTGGTGATGGAACTGAATATCATTAAGGAAGTGTTTCTTGGGGCAGGAATCCATCGGGAGAGATATATCAGTGCAAGTAGGTGGGGAAGGAGCATCTCAGCTGATGACTGA 2037 0.4345 MEMPSSSLRLQWWLFLVNLIICISSLRLESLSSTPTFGNETDKLALLTIKHYLVDVPNGVLSSWNDSAFLPVAWGYMQSPTSEGHNEGQSLGDNYLTGQVPDSLGVLKDLYWLNLEFNNLGRGMSGDLNFPYSLPNVSSLRLINLHANNFRGVLPISIVNRSTQLQKLIIGGNKISGSIPKGIGNLISLTVFSAMRNNLTVSFPLQLACKLQNLRVFDLNWNRLSGLLPSTLGNSSQLYYLDTGYNNLEGNLPTSLRNCQNMEILFLDHNKLSGSVPENVTCHFNQLRSLYLQQNTFTGSLPTDVGQLKNLNQLLVSDNNLSGEIPRELGSCSVLEYLDMEKNSFQGNIPLSFSSLRGIRFLDLSCNVLPGTIPKELHLLVKVLNLQHRGAAKSFMAECKVLRNIQLRNLLGIITSCSSVDNKGCDFKALVFEFMPNGNLDSWLYHESRNLSFRQRLDIAIDVAIALDYLHHQCQTPIVHGDLRPSNVLLDDDMVAHVGDFGLAKLLPEANEILSSDQTSSALMMGYIGYVAPEYGLGGSMWPQGDVYSYVILLLQMFTGRRPTESMFSDGLNLYTFSKMPLPERVMEIADSNLFRESDEAISNVGNQRETEGRMCHCLVSIARIGVACSEESVSDLMDIEDVVMELNIIKEVFLGAGIHRERYISASRWGRSISADD* 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1177 678 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 302 392 - -
Vvi5g1177 678 Gene3D Ribonuclease Inhibitor 209 280 IPR032675 -
Vvi5g1177 678 ProSiteProfiles Protein kinase domain profile. 323 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g1177 678 Gene3D Transferase(Phosphotransferase) domain 1 439 655 - -
Vvi5g1177 678 Pfam Protein tyrosine and serine/threonine kinase 375 568 IPR001245 GO:0004672|GO:0006468
Vvi5g1177 678 ProSitePatterns Tyrosine protein kinases specific active-site signature. 478 490 IPR008266 GO:0004672|GO:0006468
Vvi5g1177 678 SUPERFAMILY L domain-like 90 421 - -
Vvi5g1177 678 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 91 632 - -
Vvi5g1177 678 SMART LRR_typ_2 308 332 IPR003591 -
Vvi5g1177 678 SMART LRR_typ_2 211 234 IPR003591 -
Vvi5g1177 678 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 208 301 - -
Vvi5g1177 678 Gene3D Ribonuclease Inhibitor 38 208 IPR032675 -
Vvi5g1177 678 SUPERFAMILY Protein kinase-like (PK-like) 376 584 IPR011009 -
Vvi5g1177 678 Gene3D Phosphorylase Kinase; domain 1 365 438 - -
Vvi5g1177 678 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 435 658 - -
Vvi5g1177 678 Gene3D Ribonuclease Inhibitor 281 356 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1177 Vvi-Chr5 17527864 17530906 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1177 91 657 Receptor kinase-like Gene Family AT3G47570 37.855 2.63e-102 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vvi5g1177 PK_Tyr_Ser-Thr 7.1e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1177 - - vvi:100267622 649.047