Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1173 ATGGCAGGCGTATCTCTCAAGTGTGGAGACTGTGGAGCTCTCCTGAAATCCGTGGAGGAAGCCCAGGAACACGCGGAGCTCACCTCCCACTCCAACTTCTCCGAGTCCACCGAAGCCGTCCTCAACCTCATCTGCACCATTTGTTCCAAGCCCTGCAGATCCAAAACTGAAAGCGATTTGCATACAAAAAGAACTGGGCACACTGAATTTGTAGATAAGACTTCGGAGGCAGCCAAGCCAATATCTTTAGAGGTTCCAAAGGCGACTGATGAATCACAGGAGGTTGTGGATGCAAGTGGTAGCAGCAGCCAGCCCCAAGAAATGATTGCGCCAGAGGTTGACAAGAAGCTGCTTGAGGAACTTGAAGCAATGGGATTTCCAACGGCACGTGCGACCCGTGCACTTCATTATTCTGGTAACACCAGCCTTGAAGCTGCTGTAAACTGGGTAGTTGAACATGAGAATGATTCAGACATAGATGAGATGCCCTTGGTACCTGTCAACACCAAAGTTGAGGCTCCTAAACCATCTCTTACACCAGAAGAAATGAAGATCAAAGCTCAAGAACTAAGGGAGCGAGCTCGCAAGAAAAAAGAAGAGGAAGATAAAAGAATGGAAAGAGAGAAAGAAAAGGAGAGAATTCGAGTGGGCAAAGAACTACTTGAAGCAAAGCGAATTGAGGAAGAAAATGAAAGAAAACGTATATTGGCCTTGCGAAGAGCAGAGAAAGAGGAAGAGCAAAGAGCTAGGGAAAAAATTCGTCAGAAATTGGAGGAAGACAAGGCAGAAAGAAGGCGGAAGCTTGGATTGCCACCAGAAGATCCTGCTGCTGTAAAACCTTCTGCTTCTGTTGTGCAGGAGAAAAAGACCTTTTTGCCTGTTAAGCCTGTTACAAAGGTAGAGCAAATGAGAGAGTGCCTGCGATCGCTCAAGCAAAATCACAAGGATGAGGATGCCAAAGTGAAAAGAGCATTCCACACTCTTTTAACTTATATAGGGAATGTTGCCAAGAATCCCGATGAAGAGAAATTCAGAAAAATTAGACTCACTAACCCGTCTTTTCAGGAGAGAGTAGGTGGACTTAAAGGAGGCATTGAGTTTCTGGAGCTGTGTGGGTTTGAGAAGATAGAAGGTGGAGAGTTCTTGTTTCTCCCAAGGGACAAGGTTGAGATGGCAGTGCTGAATTCAGCTGGGTCTGAGCTCAACTCTGCAATAGTGAACCCTTTCTTTGGAGTTCTCTAG 1242 0.4605 MAGVSLKCGDCGALLKSVEEAQEHAELTSHSNFSESTEAVLNLICTICSKPCRSKTESDLHTKRTGHTEFVDKTSEAAKPISLEVPKATDESQEVVDASGSSSQPQEMIAPEVDKKLLEELEAMGFPTARATRALHYSGNTSLEAAVNWVVEHENDSDIDEMPLVPVNTKVEAPKPSLTPEEMKIKAQELRERARKKKEEEDKRMEREKEKERIRVGKELLEAKRIEEENERKRILALRRAEKEEEQRAREKIRQKLEEDKAERRRKLGLPPEDPAAVKPSASVVQEKKTFLPVKPVTKVEQMRECLRSLKQNHKDEDAKVKRAFHTLLTYIGNVAKNPDEEKFRKIRLTNPSFQERVGGLKGGIEFLELCGFEKIEGGEFLFLPRDKVEMAVLNSAGSELNSAIVNPFFGVL* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1173 413 SUPERFAMILY PUG domain-like 297 405 IPR036339 -
Vvi5g1173 413 Coils Coil 226 263 - -
Vvi5g1173 413 Coils Coil 184 215 - -
Vvi5g1173 413 MobiDBLite consensus disorder prediction 255 272 - -
Vvi5g1173 413 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 112 153 IPR015940 -
Vvi5g1173 413 Pfam PUB domain 320 390 IPR018997 -
Vvi5g1173 413 ProSitePatterns Zinc finger C2H2 type domain signature. 8 30 IPR013087 -
Vvi5g1173 413 MobiDBLite consensus disorder prediction 255 282 - -
Vvi5g1173 413 CDD UBA_PUB_plant 112 160 - -
Vvi5g1173 413 MobiDBLite consensus disorder prediction 86 107 - -
Vvi5g1173 413 PANTHER F13M7.16 PROTEIN 1 413 - -
Vvi5g1173 413 Gene3D - 304 403 - -
Vvi5g1173 413 CDD PUB_UBA_plant 307 413 - -
Vvi5g1173 413 SMART uba_6 114 152 IPR015940 -
Vvi5g1173 413 Pfam UBA/TS-N domain 118 149 IPR015940 -
Vvi5g1173 413 SUPERFAMILY UBA-like 95 165 IPR009060 GO:0005515
Vvi5g1173 413 Gene3D - 114 160 - -
Vvi5g1173 413 SMART PGNneu 323 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1173 Vvi-Chr5 17396889 17430441 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1173 97 413 C2H2 Transcription Factor Family AT1G04850 79.624 9.70e-157 443
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1173 K24348 - vvi:100248761 732.25