Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1156 ATGGACTACATTGTGCCATCTCTTGGATGTTTAGAAAAATCCGCTCAGTCCCAACTCGGATCCATTCAGAAGAATCTGAATCAGGGTGTCAATTTGGACCTACTGAACATTGAAGACCTTAACCTGGACCACCAAATACCTCGGGGTCACCCAGAAATTGTTTTTCTTCCCAAGACCAATTTCCACATCATATGTTCCCTCCCTGGTCACTTGATCTACATGCTTGGAGATATTGACAAGCATGTTATCGAGAGGTTTGAAAAGGAGGCAGCTGAAATGAACAAGCAATCCTTCAAGTATGCCTGGGTGTTGGACAAACTGAAGGCGGAGCGTGAACGTGGTATCACCATTGATATTTCCTTGTGGAGGTTTGAGACCACCAGCCGGTATCTCCAAGGATGA 402 0.4527 MDYIVPSLGCLEKSAQSQLGSIQKNLNQGVNLDLLNIEDLNLDHQIPRGHPEIVFLPKTNFHIICSLPGHLIYMLGDIDKHVIERFEKEAAEMNKQSFKYAWVLDKLKAERERGITIDISLWRFETTSRYLQG* 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1156 133 PANTHER TRANSLATION FACTOR 67 131 - -
Vvi5g1156 133 Pfam Elongation factor Tu GTP binding domain 67 129 IPR000795 GO:0003924|GO:0005525
Vvi5g1156 133 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 105 120 IPR031157 -
Vvi5g1156 133 Gene3D - 65 132 IPR027417 -
Vvi5g1156 133 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 66 130 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1156 Vvi-Chr5 16999490 16999891 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1156 69 130 Eukaryotic Initiation Factors Gene Family AT5G60390 87.097 2.82e-33 119
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1156 K03231 - vri:117933413 212.616