Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1149 ATGGCTTCGCAACCCATGTTAGGCCCTAGAACGCAGAGTTTTGAAGCAGAAAAATCGGCGGCGACGCTTTTGATTCGGCATCTCCCCGAAGCCATTCCTCAGGACACCCTGTCTCGCCTCTTCTCCAGCTATGGCGCTTCTTCTGTCCGTCCTTGCACTTCTGGAAGATTGAGAAACTGTGCATTTGTGGATTTCAAGAGTGAAATGTTGGCTTCTCAAGCACTACGCCAATTAAATGGGCTGAGGTTTCTTGGTAAAGTTTTGTTAGTGGAGAGAGCAAATAAGCCAACTGAGGATGATAAACAAAAAAGTGAAGCTCTATTTGGCAAGGATCTTACTAAACCCGTATCTTTAATAAAGGATTTTACCATGGCCAGAGATCTCGATGAAGGATTGAAGTCAAGCTCCTTACCTGCTAGTGAACCCATCGCTGCAAGACTTGGCATTGATTACCCATTTCCTCCCCACCTTGAGTACGCTTACCCCCCACCAGATGGAAATATTCTGACCAACATTGTAAATGCTCTAATTGCTGTTCCTCGCTTCTATGTACAGGTGTTGCACTTGATGAACAAAATGAACATTCCAGCTCCATTTCGTATGGCCTTGCCCACCCCACCTTTACCACCTCCAGTACCTGCCCCGCCACCACCACCTCCACCCCCTGAAGCTGCAAGACCTAACTTGGAAGACCTATCTAGTGGCGAGTCTGAAATGGAATCATCAGATGAGGAGGTCGATGGCAATGCCTATTCTACTGGGCCTCCAAGAGAAACAAAACCTGGTCGAAAGCGTGTCAAACGAGAAGCTATTGTAGGCCCTGGAGTTGATAAAGATGTGGCTCACGAGGCTGTTGGAGTGAAACCTGCCACCTTGGTTCCTAAAGAGATTCCAATGATAAAAAAGAAGAACCCTGTGTTGCAGATCAAAATTGTCCCCAAGGTAATCACTGAACATAAAGATGAATGTAGCATCATGAAAGAATCGGAGGATTCTGAGAAAGAGGATTTTGATCTCAAACCTTATGCAACCTTGGAAGAATTAAAAAGTGGAAAGTTGCCTCCAGAGGAAATCTTATCACTTCCAATGTTTAAGAACTATACGGCTGGGAATCCTGCTCCTGTGTTGTACATAAAGAACTTGGCAAAAGATGTGGTTGTAGATGACTTCTATTTCATATTTGGATCATTATTTGGAAGTGTGGATGCTGCTAAATCTGGCCTTAGTGTGAAGTTGATGCAGGAGGGAAGAATGAGGGGCCAAGCTTTTGTGACATTTCCATCAGTTGAACTTGCTCATCATGCTTTGGTATGTGTCTACACTAATGAAACTTGA 1335 0.4464 MASQPMLGPRTQSFEAEKSAATLLIRHLPEAIPQDTLSRLFSSYGASSVRPCTSGRLRNCAFVDFKSEMLASQALRQLNGLRFLGKVLLVERANKPTEDDKQKSEALFGKDLTKPVSLIKDFTMARDLDEGLKSSSLPASEPIAARLGIDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYVQVLHLMNKMNIPAPFRMALPTPPLPPPVPAPPPPPPPPEAARPNLEDLSSGESEMESSDEEVDGNAYSTGPPRETKPGRKRVKREAIVGPGVDKDVAHEAVGVKPATLVPKEIPMIKKKNPVLQIKIVPKVITEHKDECSIMKESEDSEKEDFDLKPYATLEELKSGKLPPEEILSLPMFKNYTAGNPAPVLYIKNLAKDVVVDDFYFIFGSLFGSVDAAKSGLSVKLMQEGRMRGQAFVTFPSVELAHHALVCVYTNET* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1149 444 FunFam U11/U12 small nuclear ribonucleoprotein 65 kDa protein 14 111 - -
Vvi5g1149 444 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 376 438 IPR000504 GO:0003723
Vvi5g1149 444 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 88 IPR000504 GO:0003723
Vvi5g1149 444 MobiDBLite consensus disorder prediction 258 274 - -
Vvi5g1149 444 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 374 444 IPR000504 GO:0003723
Vvi5g1149 444 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 95 IPR000504 GO:0003723
Vvi5g1149 444 SMART rrm1_1 375 442 IPR000504 GO:0003723
Vvi5g1149 444 SMART rrm1_1 22 91 IPR000504 GO:0003723
Vvi5g1149 444 MobiDBLite consensus disorder prediction 208 226 - -
Vvi5g1149 444 MobiDBLite consensus disorder prediction 208 274 - -
Vvi5g1149 444 Gene3D - 368 443 IPR012677 -
Vvi5g1149 444 Gene3D - 4 106 IPR012677 -
Vvi5g1149 444 SUPERFAMILY RNA-binding domain, RBD 21 437 IPR035979 GO:0003676
Vvi5g1149 444 PANTHER UNCHARACTERIZED 16 436 IPR045164 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1149 Vvi-Chr5 16932487 16942505 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1149 19 137 Eukaryotic Initiation Factors Gene Family AT1G71770 25.410 7.42e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1149 K13157 - vvi:100243611 791.186