LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi5g1133	ATGGCTTCCACAAGTTCTACTTCTACTTTCATCCCACAATGGAATTATGATGTTTTCTTGAGTTTTAGAGGCGAAGACACCCGATTCAATTTCACTGATCACTTGTATGCAAATTTGATTCGAAGAGGTATTCATACCTTTAGAGATGATTCACTTAAGAGAGGGGAAGAGATTGCACCTGAACTCCTTAAAGCTATTGAAGAATCAAGGTTTTCCCTTGTAGTTTTCTCGGAAAACTATGCTCGTTCAAGATGGTGTTTAGATGAGCTGTTGAAGATCATGAAGTGCAGGAAAGAAATGAAACAAACTGTGGTACCGATTTTCTACCATGTGGATCCATCCCATGTACGGCACCAGACAGAAGGGTTTGGAGAGGCATTTTCCAATTGCAAAGAAGATACAGAGGAGATGAAAGAGAAGCTGCAAAGTTGGAGGAGTGCATTGACAGAAGCAGCCAATATATCTGGAGAGCATGTGAAGGATGGGTATGAGTCTGAGCATACTAAGAAAATCGTCAACAACATATTCATGAGATTGAATTGTAGAATGTTTGATGTTGGTGCCAACTTAGTTGGTATGGATTCCCGTGTTACCGAGATAATTTGGCGGCTATGTGTTGATCAATTGAATGATGTTCGCATAATTGGTATATGTGGAATAGGCGGAATGGGTAAGACGACTATCGCCAAAGTTGTATACAATAAATTTTCTCATGAATTTGAGTATATGAGCTTTCTTGAAAATGTTAGAGAAGTTTGCAACACTATGGGTTTGCATCATTTACAAAATCAACTTCTTTGTGATTTACTAGAGGTGGAGAGAAATCAAAACATAAGCAATGTTGGGCAAGGAGCCAATATGATAAAAAATGTTCTCCGATTTAAAAGAGTTTTTATTGTTCTCGATGACATTGATGATTCAGATCAATTAGAATATTTACTCAGAAATCGTGATTGGCTTGGAAAAGGAAGCAGAGTCATCATTACAACTAGAAGTAAACAGTTGTTGCAAGAAATGGATGACGTATATGAGGTTGAGGAATTAAATTTTGAACAAGCTCGTGAGCTTTTTAGTCTCTATGCTTTTAAACAAAATCTTCCTAAACAAGACTTCATCCACCTCTCGGATCGCGTAGTCTACTATTGTCATGGTCTTCCATTAGCTCTAAAAGTCCTCGGTTCTCTCTTGTTTAACAAGACAATAATCCAATGGGAAAGTGAATTGTGTAAATTAGAAAGGGAACCTGAAGTGAAAATACAAAATGTGCTTAAAATAAGCTTTGACGGATTAGATCATACACAGAAGAAAATATTTCTTGATATTGCATGTTTTTTTAAAGAAGAAGACAAAGATTTTGTTTTAAGGATATTGGATAGTTGTGATTTATATGTAGAGATAGGAATAAAAGTCCTCTGTGATAAGTGTCTTATATCTCTTTCCAAAAACAAGATACTTATGCATGATTTGATACAAGAAATGGGATGGAACATTATTCGTAGTGAATTTCCCGATGATCCTGGAAAATGGAGCAGATTGTGGGATCCGAGTGATGTGTATCGTGCATTTACAATGAAAAAGGTAACCGTCAAACTCGTGAACTTATTTAAGCTTCATAAAAATATCATTCAATACTTGGACTCTCTTGAAACTATTTACTTGAATAATTGCTCAAACTTGGAGGAATTTCCGGAGATGAAGAGAAGTTCTATGAAAGCTTTATCTTATCTTCACTTTGATGGATCTGCTATTAAGGAATTACCCTCCTCAATAGAACATCTCACTGGACTTAAGGAGTTATATATGAAAGTGTGCAAAAACTTGAGGAGTCTTCCAAGTAGCATTTGCAGGTTAAAGTCCCTTAGAAACCTCCAAGTCTTTGGTTGTTCAAATCTAGATACTTTTCCAGAAATCATGGAGGATATGAAATACTTAGAATTTCTTGATTTAAGAGGAACAGGTATAAAAGAGCTACCATCATCAATGGAACATCTTCATAATATTGGTGAATTTCACTGCAAGATGCTCCAAGAAATTCCAGAGCTTCCATCAAGTCTACCAGAAATACATGCCCACGATACGAAGCTGGAAATGTTATCAGGTCCATCATCTCTACTCTGGTCTTCCCTCCTCAAATGGTTCAAACCAACAAGTAATGAGCACTTGAATTGCAAGAAAGGCAAGATGATTATCAATCCAGGAAATGGTGGAATTCCAGGGTGGGTATTGCATCAGGACATTGGAAGCCAATTAAGAATAGAGCTTCCTTTGAATTGGTACGAGGACAACCACTTTCTGGGATTTGCTTTCTTCTCTCTTTATCATAAAGAGAATCATTTTGAGGCTTCATGTCATTTTGATCTGAGATTGCGCGGTGATCCAGATGAAGTTGTGGATGACCTCTCTATTTCTTCTTGGTGTAAATGCCACGAGTTTAATGGTGATGCATCCGATGAATTGTGGGTGACTCTCTATCCTAAGAATGCTATTCCAAATAAGTACCACCGCAAACAACCATGGCACTTTCTGGCTGCGTTTGATTTTGTTACTAGGATTAATGGTCAGGCTACTCATACCAATATCAAGAGGTGCGGGGTTCAGCTGATATACACCCATGATTATCTACACGATAATGTGCCTATGTTGGTGGATCATCAAAGAGGCCATGATGATGCCGGGGAAAACCAAGCAGATGATCAGGAACCACACCCTAAAAGATTGAGAGCATCCAGCACTGATCTCAAGCTTTAA	2748	0.3774	MASTSSTSTFIPQWNYDVFLSFRGEDTRFNFTDHLYANLIRRGIHTFRDDSLKRGEEIAPELLKAIEESRFSLVVFSENYARSRWCLDELLKIMKCRKEMKQTVVPIFYHVDPSHVRHQTEGFGEAFSNCKEDTEEMKEKLQSWRSALTEAANISGEHVKDGYESEHTKKIVNNIFMRLNCRMFDVGANLVGMDSRVTEIIWRLCVDQLNDVRIIGICGIGGMGKTTIAKVVYNKFSHEFEYMSFLENVREVCNTMGLHHLQNQLLCDLLEVERNQNISNVGQGANMIKNVLRFKRVFIVLDDIDDSDQLEYLLRNRDWLGKGSRVIITTRSKQLLQEMDDVYEVEELNFEQARELFSLYAFKQNLPKQDFIHLSDRVVYYCHGLPLALKVLGSLLFNKTIIQWESELCKLEREPEVKIQNVLKISFDGLDHTQKKIFLDIACFFKEEDKDFVLRILDSCDLYVEIGIKVLCDKCLISLSKNKILMHDLIQEMGWNIIRSEFPDDPGKWSRLWDPSDVYRAFTMKKVTVKLVNLFKLHKNIIQYLDSLETIYLNNCSNLEEFPEMKRSSMKALSYLHFDGSAIKELPSSIEHLTGLKELYMKVCKNLRSLPSSICRLKSLRNLQVFGCSNLDTFPEIMEDMKYLEFLDLRGTGIKELPSSMEHLHNIGEFHCKMLQEIPELPSSLPEIHAHDTKLEMLSGPSSLLWSSLLKWFKPTSNEHLNCKKGKMIINPGNGGIPGWVLHQDIGSQLRIELPLNWYEDNHFLGFAFFSLYHKENHFEASCHFDLRLRGDPDEVVDDLSISSWCKCHEFNGDASDELWVTLYPKNAIPNKYHRKQPWHFLAAFDFVTRINGQATHTNIKRCGVQLIYTHDYLHDNVPMLVDHQRGHDDAGENQADDQEPHPKRLRASSTDLKL*	916

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi5g1133	915	Gene3D	-	347	431	IPR042197	-
	Vvi5g1133	915	SMART	till_3	15	154	IPR000157	GO:0007165
	Vvi5g1133	915	Gene3D	-	11	183	IPR035897	-
	Vvi5g1133	915	Pfam	C-JID domain	736	872	IPR045344	-
	Vvi5g1133	915	FunFam	Disease resistance protein (TIR-NBS-LRR class)	12	181	-	-
	Vvi5g1133	915	Pfam	NB-ARC domain	197	419	IPR002182	GO:0043531
	Vvi5g1133	915	MobiDBLite	consensus disorder prediction	883	915	-	-
	Vvi5g1133	915	SUPERFAMILY	Toll/Interleukin receptor TIR domain	6	156	IPR035897	-
	Vvi5g1133	915	SUPERFAMILY	L domain-like	486	699	-	-
	Vvi5g1133	915	PRINTS	Disease resistance protein signature	214	229	-	-
	Vvi5g1133	915	PRINTS	Disease resistance protein signature	382	396	-	-
	Vvi5g1133	915	PRINTS	Disease resistance protein signature	543	559	-	-
	Vvi5g1133	915	PRINTS	Disease resistance protein signature	291	305	-	-
	Vvi5g1133	915	Gene3D	Ribonuclease Inhibitor	524	697	IPR032675	-
	Vvi5g1133	915	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	16	698	IPR044974	GO:0006952
	Vvi5g1133	915	ProSiteProfiles	TIR domain profile.	14	179	IPR000157	GO:0007165
	Vvi5g1133	915	Gene3D	-	184	346	IPR027417	-
	Vvi5g1133	915	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	179	441	IPR027417	-
	Vvi5g1133	915	Pfam	TIR domain	15	177	IPR000157	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi5g1133	Vvi-Chr5	16286360	16291388	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi5g1133	10	721	WRKY Transcription Factor Family	AT4G12020	27.690	3.01e-65	238

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi5g1133	-		-	vvi:100854464	1094.72