Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1132 ATGGCTTCCACAAGTTCTACTTCTACTTCTATTTCTACTTTCATCCCACAATGGAAGTATGATGTTTTCTTGAGTTTTCGAGGTGAAGACACCCGATTCAATTTCACTGATCACTTGCATGCAAATTTGATTCGAAGAGGTATTACTACCTTTAGAGATGATGATTCACTTAAGAGAGGGGAAGAGATTGCGCCTGAACTCCTAAAAGCTATTGAAGAATCAAGGTTTTCCCTAATAGTTTTCTCGGAAAACTATGCTGGTTCCAGATGGTGTTTAGATGAGCTGGTGAAGATCATGAAGTGCAGGAAAGAAATGAAACAAACTGTGGTACCGATTTTCTACCATGTGGATCCATCCCATGTACGGCACCAGACAGGAAGGTTTGGAGAGGCATTTTCCAATTACAAAGAAGATACAGAGGAGATGAAAGGGAAGGTGCGAAGTTGGAGGAGTGCATTGACAGAAGCAGCCAATATAGGTGGAGAGCATGTGGAGAAGAATGGGTATGAGTCCGGGCATGTTAATGAAATCGTCAAGGATATATTCAGGAGATTGAATTGTAGAATGTTGGATGTTGATGACAACTTGGTTGGTATGGATTCTCATGTAAATGAGATAATTCGGCGCCTATGTGTTGATCAATTGAATGATGTTCGTATCATTGGTATATGTGGAATAGGTGGAATGGGTAAAACGACTATCGCCAAAGTTGTATATAATAGATTTTCTCATGAATTTGAGTATATGAGCTTTCTCGAAAATGTTAGAGAAGTTGGCAATACTATGGGTTCGCATCATTTACAAAATCAATTTCTTTGTGATCTACTACAAGTGGAGAGAAATCAAAATGTAAGCAATGTTGGCCAAGGAGCCAATACGATAAAAAATGTTCTCCGATGTAAAAGAGTTTTTATTGTTCTTGATGACATTGATCATTCAAATCAATTAGAATATTTACTCAGAAATCGTGATTGGCTTGGAAGAGGAAGCAGAGTCATCATAACAACAAGAAATAAACATTTGTTACAAGAAACGGATGACGTATATGAGGTTGAGGAATTAAATTCTAAACAAGCTCGTGAGCTTTTTAGTCTCTTTGCTTTTAGACAAAATCTTCCTAAACAAGACTTCATCGACCTCTCGGATCGTGTAGTCAATTATTGTCATGGCCTTCCTTTAGCTCTAAAAGTCTTGGGTTCTTTTTTGTTTAACAAGGCAATACCCCAATGGGAAAGTGAATTGTCTAAATTGGAAAGAGAACTTGAAGTGGGAATTTCTGATGTGCTTAAAGTAAGCTATGACGGATTAGATTATACACAGCAGGAAATATTTCTTGATATTGCATGTTGTTTTAAAGGGAAAGACAAAGACTTTGTTTCAAGAATATTGGACGGTTGTAATTTTTATGCAGAGAGAGGAATAAGAGCCCTCTGTGATAAGTGTCTTATATCTCTTTCTGAAAATAAGATACTTATGCATGATTTGATACAACAAATGGGATGGAACATTATTCGTAGTGAATATCTTGGTGATCCTACAAAATGGAGGAGATTGTGGGATCCGAGTGATATCTGTCGTGCATTTAGAATGGGGGGGATGAAAAATGTTGAGGCAATATTCTTGGACTTGTCTAGATCGACACCACTAGAAGTTAGTACAAAGATTTTTGCAAAGATGAAAAAACTTAGATTGCTCAAGATTTATTCGAGCGGTTATTATGGTACCATGGAAAAGCAGTTGAAAGTTATTCTTCCTGAAGATTTTCAATTCCCTGCACATGAGTTGAGATATCTTCATTGGGAAGGATACCCTTTCAAATCATTGCCGTCAAATTTTCTTGGAGTGAACCTTATTGAACTCAACATGAAGGATAGCAACATAAAACAACTTATGCAAAGAAATGAGCGTTTGGAGCAGTTGAAGTTCTTAAATTTATCTGGATCAAGGCAACTCACTGAAACATCGTTCTCAAATATGCCAAATCTAGAGACGTTAATACTTGCAGATTGTACGAGTTTGAATGTTGTTGATCCATCTATTGGAGATCTCAAGAAGCTTACCGTGTTGAATTTGCTGGGGTGCGAAAACCTTACGAGTTTACCAAGTAGCATTCAATACTTGGACTCTCTTGAAGCTATGAACTTGATGACTTGCTCAAACTTGGAGGAATTTCCAGAGATGAAGGGAAGTCCTATGAAAGCTTTATCTGATCTTCTCCTTGATGGATGTGGTATTAAGGAATTACCCTCCTCAATAGAACTTCTCACTAGACTTAAGAGGTTATATTTGTCAAAGTGCAAAAACTTGAGGAGCCTTCCAAGTAGCATTTGCAGGTTAAAGTCCCTTGTTCAGCTCGATCTCCATGGTTGTTCAAATCTAGATACTTTTCCAGAAATCATGGAGGATATGAAATGCTTAGAATCTCTTGATATAAGAAGTTCAGGTATAAAAGAATTACCATCATCAATTCAAAATCTGAAAAGCCTCTTGCGTTTGGATATGAGCAATTGCCTTGTGACTCTTCCAGACAGCATTTATAATTTGAGATCTGTGACACTACGAGGTTGTTCAAACTTGGAGAAGTTTCCCAAGAATCCGGAAGGCTTCTACTCCATAGTACAACTAGATTTCAGTCACTGCAATCTAATGGAAGGGTCAATACCCACTGAAATCTGGGACCTAAATTCCTTGGAAATATTAAATCTAAGTTGGAACCATATGGTTAGCATACCTTCTGGCATCTCTCAACTTTGTAAGCTTGATTTCCTTGATATCAGTCACTGCGAGATGCTCCAAGACATTCCAGAGCTTCCATCGAGTCTGCGAAAAATAGATGCCCTCTATTGCACGAAGCTGGAAATGTTATCAAGTCCATCATCTCTACTCTGGTCTTCCCTCCTCAAATGGTTCAATCCAACAAGTAATGAGCACTTGAATTGCAAGGAAGGCAAGATGATTATTATCCTAGGAAATGGTGGAATTCCAGGGTGGGTATTGCATCAGGAGATTGGAAGCCAAGTAAGAATAGAACCTCCTCTGAATTGGTACGAGGATGACCACTTTCTGGGATTTGCTTTCTTCACTCTTTATCGTGACTACGCTCATTGTACGATTCCATCTCGATTTAGTCTGAGATTGCGCGGTGATCCGGATGAAGTTGTGGGTGACTGCAATGACCACAATGACAGCCGCATTTGGAATTGGTGTGAATGCAACCGCTGTTATGATGACGCATCAGATGGATTGTGGGTGACTCTCTATCCTAAGAATGCTATTCCAAATAAGTACCACCGCAAACAACCATGGCACTTTCTGGCTGCGGTTGATGCGACCAATATCAAGAGGTGCGGGGTTCAGCTGATATACACCCATGATTATCTACACCACAATGTGCCTATGTTGGCGGATCATCAAAAAGGCCATGATGATGCTGGGGAAAACCAAGCAGATGATCAGGAACCACACCCTAAAAGATTGAGAGCATCCAGCACTGATCTCAAGCTTTAA 3507 0.3915 MASTSSTSTSISTFIPQWKYDVFLSFRGEDTRFNFTDHLHANLIRRGITTFRDDDSLKRGEEIAPELLKAIEESRFSLIVFSENYAGSRWCLDELVKIMKCRKEMKQTVVPIFYHVDPSHVRHQTGRFGEAFSNYKEDTEEMKGKVRSWRSALTEAANIGGEHVEKNGYESGHVNEIVKDIFRRLNCRMLDVDDNLVGMDSHVNEIIRRLCVDQLNDVRIIGICGIGGMGKTTIAKVVYNRFSHEFEYMSFLENVREVGNTMGSHHLQNQFLCDLLQVERNQNVSNVGQGANTIKNVLRCKRVFIVLDDIDHSNQLEYLLRNRDWLGRGSRVIITTRNKHLLQETDDVYEVEELNSKQARELFSLFAFRQNLPKQDFIDLSDRVVNYCHGLPLALKVLGSFLFNKAIPQWESELSKLERELEVGISDVLKVSYDGLDYTQQEIFLDIACCFKGKDKDFVSRILDGCNFYAERGIRALCDKCLISLSENKILMHDLIQQMGWNIIRSEYLGDPTKWRRLWDPSDICRAFRMGGMKNVEAIFLDLSRSTPLEVSTKIFAKMKKLRLLKIYSSGYYGTMEKQLKVILPEDFQFPAHELRYLHWEGYPFKSLPSNFLGVNLIELNMKDSNIKQLMQRNERLEQLKFLNLSGSRQLTETSFSNMPNLETLILADCTSLNVVDPSIGDLKKLTVLNLLGCENLTSLPSSIQYLDSLEAMNLMTCSNLEEFPEMKGSPMKALSDLLLDGCGIKELPSSIELLTRLKRLYLSKCKNLRSLPSSICRLKSLVQLDLHGCSNLDTFPEIMEDMKCLESLDIRSSGIKELPSSIQNLKSLLRLDMSNCLVTLPDSIYNLRSVTLRGCSNLEKFPKNPEGFYSIVQLDFSHCNLMEGSIPTEIWDLNSLEILNLSWNHMVSIPSGISQLCKLDFLDISHCEMLQDIPELPSSLRKIDALYCTKLEMLSSPSSLLWSSLLKWFNPTSNEHLNCKEGKMIIILGNGGIPGWVLHQEIGSQVRIEPPLNWYEDDHFLGFAFFTLYRDYAHCTIPSRFSLRLRGDPDEVVGDCNDHNDSRIWNWCECNRCYDDASDGLWVTLYPKNAIPNKYHRKQPWHFLAAVDATNIKRCGVQLIYTHDYLHHNVPMLADHQKGHDDAGENQADDQEPHPKRLRASSTDLKL* 1169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1132 1168 Coils Coil 620 640 - -
Vvi5g1132 1168 Gene3D Ribonuclease Inhibitor 528 727 IPR032675 -
Vvi5g1132 1168 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 727 IPR044974 GO:0006952
Vvi5g1132 1168 SUPERFAMILY Toll/Interleukin receptor TIR domain 13 160 IPR035897 -
Vvi5g1132 1168 Gene3D - 190 352 IPR027417 -
Vvi5g1132 1168 PRINTS Disease resistance protein signature 777 793 - -
Vvi5g1132 1168 PRINTS Disease resistance protein signature 220 235 - -
Vvi5g1132 1168 PRINTS Disease resistance protein signature 388 402 - -
Vvi5g1132 1168 PRINTS Disease resistance protein signature 297 311 - -
Vvi5g1132 1168 SMART till_3 19 159 IPR000157 GO:0007165
Vvi5g1132 1168 Gene3D Ribonuclease Inhibitor 732 985 IPR032675 -
Vvi5g1132 1168 Pfam NB-ARC domain 200 427 IPR002182 GO:0043531
Vvi5g1132 1168 Pfam TIR domain 19 186 IPR000157 GO:0007165
Vvi5g1132 1168 SUPERFAMILY L domain-like 767 978 - -
Vvi5g1132 1168 Pfam C-JID domain 993 1125 IPR045344 -
Vvi5g1132 1168 ProSiteProfiles Leucine-rich repeat profile. 896 917 IPR001611 GO:0005515
Vvi5g1132 1168 Gene3D - 353 437 IPR042197 -
Vvi5g1132 1168 ProSiteProfiles TIR domain profile. 18 185 IPR000157 GO:0007165
Vvi5g1132 1168 FunFam Disease resistance protein (TIR-NBS-LRR class) 16 187 - -
Vvi5g1132 1168 Gene3D - 15 189 IPR035897 -
Vvi5g1132 1168 SUPERFAMILY L domain-like 493 840 - -
Vvi5g1132 1168 MobiDBLite consensus disorder prediction 1136 1168 - -
Vvi5g1132 1168 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 447 IPR027417 -
Vvi5g1132 1168 SMART LRR_typ_2 755 779 IPR003591 -
Vvi5g1132 1168 SMART LRR_typ_2 894 917 IPR003591 -
Vvi5g1132 1168 SMART LRR_typ_2 826 848 IPR003591 -
Vvi5g1132 1168 SMART LRR_typ_2 803 825 IPR003591 -
Vvi5g1132 1168 SMART LRR_typ_2 732 754 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1132 Vvi-Chr5 16266732 16271178 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1132 755 967 WRKY Transcription Factor Family AT4G12020 25.234 5.25e-06 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1132 - - vvi:104879366 2353.56