Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1122 ATGAAAGAGAAGGTGCGAAGTTGGAGGAGTGCATTGACAGAAGCAGCCAATATATCTGGAGAGCATGTGAAGGATGGGTATGAGTCCAAGCATGTTAACAAAATCGTCAACCATATATTCAGGACATTGAATTGTAGAATGTTGGATGTTGGTGACAACTTGGTTGGTATGGATTCCCATGTAGAGGAGATAATTCGACGGCTATGTGTTGATCAATTGAATGATGTTCGGATCATTGGTATATGTGGAATAGGCGGAATGGGTAAGACGACTATCGCCAAAGTTGTATATAATACATTTTCTCATGAATTTGAGTATATGAGCTTTCTCGAAAATGTTAGAGAAGTTGGCAATACTATAGGTTTGCATCATTTACAAAATCAAATTCTTTGTGATCTACTACAAGTGGAGAGAAATCAAAATGTAAGCAACATTAGCCAAGGAGCCAATATGATAAAAAATGTTCTCCGATGTAAAAGAGTTTTTATTGTTCTCGATGACATTGATGATTCAAATCAATTAGAACATTTACTCAGAAATCGTGATTGGCTTGGAAGAGGAAGCAGAGTCATCATAACAACAAGAAATAAACATTTGTTACAAGAAATGGATGACATATATGAGGTTGAGGAATTAAATTCTAAACAAGCTCGTGAGCTTTTTAGTCTCTTTGCTTTTAGACAAAATCTTCCTAAACAAGACTTCATCCACCTCTCAGATCGTGTAGTCCGTTATTGTCACGGCCTTCCTTTAGCTCTAAAAGTCCTCGGTTCTTTCTTGTTTGACAAGACAATATTCGAATGGGAAAGTCAATTGCATAAATTGAAAAGAGAACCTGAAGTGAAAATTCATAATGTGCTTAAAGTAAGCTTTGACGGATTAGATTATACACAGAAGAAAACATTTCTTGATATTGCATGTTTTTTTAATGAGGAAGACAAAGACTATGTTTCAAGGATATTGGACAGTTGTGATTTGAATGCAAAGATAGAAATAAAAGTCCTCTGTGATAAGTGTCTTATATCTCTTTCTAAAAATAAGATTCTTATGCATGATTTGATACAAGAAATGGGATGGAACATTATTCGTAGTGAATCTCCTGATGATCCTACAAAATGGAGTAGATTGTGGGATCCGAGTGATGTGCGTCGTGCATTTACAATGGGGCTTCGTTACCTTGGTATCAGTCACTGCAAGATGCTCCAAGAAATTCCAGAGCTTCCATCGAGTCCACGAGAAATAGATGCCCACTATTGCACGAAGCTGGAAATGTTATCGAGTCCATCATCTCTACTCTGGTCTCCCCTCCTCAAATGGTTTAATCCAACAAGTAATGAGCACTTGAATTGCAAGGAAGGCAAGATGATTGTTATCCTAGGAAATGGTGGAATTCCAGGGTGGGTATTGCATCAGGAGATTGGAAGCCAAGTGAGAATAGAGCCTCCTTTGAATTGGTACGAGGATGACCACTTTCCGGGATTTGCTTTCTTCACTCTTTATCGTGAGGGTGATTGTCTGCATCGAACTCCATTTAGTCTGAGATTGCGCGGTGACCCGGATGAAGTTTTGGATGGCCGCACCATTAGGTTTGGGTGTACATGCGACAGCTTTAATGGTGATGCATCAGGTCCATTGTCGGTGACTCTCTATCCTAAGAATGCTATTCCAAATAAGTACCAACGCAATCAACCATGGCACTTTCTGGTTGCGTTTGATTTTTTTCCTAGGATTAATGGTTCGCCTATGCATCCCAATATCAAGAGGTGCGGAGTTCAGCTGATATACACCCATGATTATCTACATGACAATGTGTCTATGTTGTTGGATCATCAAAGAGGCCATGATGATGCCAGGGAAAACCAAGCAGATGATCAGGAACCACACCCTAAAAGATTGAGAGCATCCAGCACTGATCTCAAGCTTTAA 1926 0.392 MKEKVRSWRSALTEAANISGEHVKDGYESKHVNKIVNHIFRTLNCRMLDVGDNLVGMDSHVEEIIRRLCVDQLNDVRIIGICGIGGMGKTTIAKVVYNTFSHEFEYMSFLENVREVGNTIGLHHLQNQILCDLLQVERNQNVSNISQGANMIKNVLRCKRVFIVLDDIDDSNQLEHLLRNRDWLGRGSRVIITTRNKHLLQEMDDIYEVEELNSKQARELFSLFAFRQNLPKQDFIHLSDRVVRYCHGLPLALKVLGSFLFDKTIFEWESQLHKLKREPEVKIHNVLKVSFDGLDYTQKKTFLDIACFFNEEDKDYVSRILDSCDLNAKIEIKVLCDKCLISLSKNKILMHDLIQEMGWNIIRSESPDDPTKWSRLWDPSDVRRAFTMGLRYLGISHCKMLQEIPELPSSPREIDAHYCTKLEMLSSPSSLLWSPLLKWFNPTSNEHLNCKEGKMIVILGNGGIPGWVLHQEIGSQVRIEPPLNWYEDDHFPGFAFFTLYREGDCLHRTPFSLRLRGDPDEVLDGRTIRFGCTCDSFNGDASGPLSVTLYPKNAIPNKYQRNQPWHFLVAFDFFPRINGSPMHPNIKRCGVQLIYTHDYLHDNVSMLLDHQRGHDDARENQADDQEPHPKRLRASSTDLKL* 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1122 641 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 5 434 IPR044974 GO:0006952
Vvi5g1122 641 Gene3D - 211 295 IPR042197 -
Vvi5g1122 641 Gene3D - 43 209 IPR027417 -
Vvi5g1122 641 SUPERFAMILY "Winged helix" DNA-binding domain 282 384 IPR036390 -
Vvi5g1122 641 PRINTS Disease resistance protein signature 246 260 - -
Vvi5g1122 641 PRINTS Disease resistance protein signature 155 169 - -
Vvi5g1122 641 PRINTS Disease resistance protein signature 385 401 - -
Vvi5g1122 641 PRINTS Disease resistance protein signature 78 93 - -
Vvi5g1122 641 Pfam C-JID domain 463 598 IPR045344 -
Vvi5g1122 641 Gene3D - 1 42 IPR035897 -
Vvi5g1122 641 Pfam NB-ARC domain 58 281 IPR002182 GO:0043531
Vvi5g1122 641 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 46 305 IPR027417 -
Vvi5g1122 641 MobiDBLite consensus disorder prediction 611 641 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1122 Vvi-Chr5 15967370 15971395 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1122 1 386 WRKY Transcription Factor Family AT4G12020 32.564 4.43e-55 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1122 - - vvi:104879391 782.326