Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1119 ATGTTGGATGTTGGTCATGACAACTTAGTTGGTATGGATTCTCATGTATATGAGATAATTCGGCGGCTATGTGTTGATCAATTGAATGATGTTCGTATCATTGGTATATGTGGAATAGGCGGAATGGGTAAAACGACTATCGCCAAAGTAGTATATAATACATTTTCTCATGAATTTGAGTATATGAGCTTTCTTGAAAATGTTAGAGAAGTTGGCAATACTATGGGTTTGCATCATTTACAAAATCAACTTCTATGTGATCTACTACAAGTGGAGAGAAATCAAAATGTAAGCAATGTTGGCCAAGGAGCCAATATGATAAAAAATGTTCTCCGATGTAAAAGAGTTTTTATTGTTCTTGATGACATTGATGATTTAGATCAATTGGAATATTTACTCAGAAATCATGATTGGCTTGGAAGAGGAAGCAGAGTCATCATAACAACTAGAAATAAACATTTGTTACATGAAATGGATGAAGTATATGAGGTTGAGGAATTAAATTTTGAACAAGCTCGTGAGCTTTTTAGTCTCTTTGCTTTTAGACAGAATCTTCCCAAACAAGACTTCATCCACCTCTCGGATCGTGTAGTCTATTATTGTCATGGTCTTCCTTTAGCTCTAAAAGTCCTCGGTTCTCTCTTGTTTAACAAGACAATACTCCAATGGGAAAGTGAATTGTGTAAATTGGAAAGAGAACCTGAAGTGAAAATTCAGATTGTGCTTAAACTAAGTTTTGACGGATTAGATTATACACAGAAGAAAATATTTCTTGATATTGCATGTTGTTTTAAAGGGGAAGACAAAGACTTTGTTTCAAGAATATTGGATGGTTGTAATTTGTATGCAGAGAGCGGAATAAAAGCCCTCTATGATAAGTGTCTTATATCTTTTTCTAAAAATAAGATACTTATGCACGATTTGATACAAGAAATGGGACGGAACATTATTCGTAGTGAATCTCCTTATGATCCTACAAAATGGAGCAGATTATGGGATCCGAGTGATGTGTGTCGTGCATTTACAATGGGGAAGGGGATGAAAAATGTTGAGGCAATATTCTTGGACTTGTCGAGATCGACACCACTACAAGTTAGTACAAAGATTTTTGCAAAGATGAAACAACTTAGATTGCTCAAGATTTATTTAGGCGGTTATTGTGGTACTAGGGAAAAGCAATTGAAAATTATTCTTCCTGAAGATTTTCAATTCCCTGCACCTGAGTTGAGATATCTTCATTGGGAAGGATACCCTTTGAAATCATTGCCGTCATATTTTCTTGGAGTGAACCTTATTGAACTCAACATGAAGGATAGCAACATAAAACAACTTCGGCAAAGAAATGAGCGTTTGGAGCAGTTGAAGATCTTAAATTTATCTGGATCAAGGCAACTCACTGAAATATCGTTCTCAAATATGCCAAATCTAGAGAAGTTAAAACTTGAAGATTGTACGAGTTTGAATGTTGTTGATCCATCTATTGGAGATCTCAAGAATCTTACCACGTTGAATTTGAGTGGGTGCAAAAACCTTACGAGTTTACCAAGTAGCATTCAATACTTGGACTCTCTTGAAATTATGGACTTGGATCAATGCTCAAACTTCGAGGAATTTCCAGAGATGAAGGGAAGTCCTATGAAAGCTTTATCTAATCTTGTCCTTGATGGATGTGGTATTAAGGAATTCCCCTCCTCGATAGAACTTCTCACTGAACTTCAGAGCTTATTTTTGTCAGACTGCAAAAACTTGAGGAGCCTTCCAAGTAGCATTTGCAGGTTAAAGTCCCTTAAGATCCTCTCTCTCAATGATTGTTCAAATCTAGATACTTTTCCAGAAATCACGGAGGATATGAAATACTTAGGAATTCTTGATTTAAGTGGAACTGGTATAAAAGAGCTACCATCATCAATTCAAAATCTGAAAAGCCTCTGGCGTTTGGATATGAGCAATTGCCTTGTGACTCCTCCAGACAGCATTTATAATTTGAGATCCCTTACATATCTGAGACTACGAGGTTGTTGTTCAAACTTGGAGAAGTTTCCCAAGAATCCGGAAGGCTTCTGCACCTTAGAACGACTAGATTTGAGTCACTGCAATCTAATGGTTAGCATACCTTCTGGCATCTCTCAACTTTGTAAGCTTCGTTACCTTGATATCAGTCACTGCAAGATGCTCCAAGACATTCCAGAGCTTCCATCAAGTCTGCGAGAAATAGATGCCCACTATTGCACCAAGCTGGAAATGTTATCAAGTCCATCATCTCTACTCTGGTCTTCCCTCCTCAAATGGTTCAATCCAACAAGTAATGAGCACTTGAATTGCAAGGAAAGCAAGATGATTCTTATCCTAGGAAATGGTGGAATTCCAGGGTGGGTATTGCATCAGGAGATTGGAAGCCAAGTAAGAATAGAGCCTCCTTTGAATTGGTACGAGGATGACTACTTTCTGGGATTTGCTTTCTTCACTCTTTTTCGTGACGAGACTCTACATTGTCTGTATGGATCTCAATTTAGTCTGAGATTGCGCGGTGATCCGGATGAAGTTGTGGATGACCACGACATTTCCTATTGGTGTAATTGCGACAGCTTTAATGGTTATACATCAGATCGATTGTTGGTGACTCTCTATCATAAGAATGCTATTCCAAATAAGTACCACCGCAAACAACCATGGCACTTTCTGGCTGATTTTGTTCCTAGGTATGATCATATCAATATCAAGAGGTGCGGAGTTCAGCTGATATACACCCATGATTATCTACATGACAATGTGCCTATGTTGTTGGATCATCAAAAAGGCCATGATGATGCCGGGGAAAACCAAGCAGATGATCAGGAACCACACCCTAAAAGATTGAGAGCATCCAACACTAATCTCAAGCTTTAA 2886 0.3791 MLDVGHDNLVGMDSHVYEIIRRLCVDQLNDVRIIGICGIGGMGKTTIAKVVYNTFSHEFEYMSFLENVREVGNTMGLHHLQNQLLCDLLQVERNQNVSNVGQGANMIKNVLRCKRVFIVLDDIDDLDQLEYLLRNHDWLGRGSRVIITTRNKHLLHEMDEVYEVEELNFEQARELFSLFAFRQNLPKQDFIHLSDRVVYYCHGLPLALKVLGSLLFNKTILQWESELCKLEREPEVKIQIVLKLSFDGLDYTQKKIFLDIACCFKGEDKDFVSRILDGCNLYAESGIKALYDKCLISFSKNKILMHDLIQEMGRNIIRSESPYDPTKWSRLWDPSDVCRAFTMGKGMKNVEAIFLDLSRSTPLQVSTKIFAKMKQLRLLKIYLGGYCGTREKQLKIILPEDFQFPAPELRYLHWEGYPLKSLPSYFLGVNLIELNMKDSNIKQLRQRNERLEQLKILNLSGSRQLTEISFSNMPNLEKLKLEDCTSLNVVDPSIGDLKNLTTLNLSGCKNLTSLPSSIQYLDSLEIMDLDQCSNFEEFPEMKGSPMKALSNLVLDGCGIKEFPSSIELLTELQSLFLSDCKNLRSLPSSICRLKSLKILSLNDCSNLDTFPEITEDMKYLGILDLSGTGIKELPSSIQNLKSLWRLDMSNCLVTPPDSIYNLRSLTYLRLRGCCSNLEKFPKNPEGFCTLERLDLSHCNLMVSIPSGISQLCKLRYLDISHCKMLQDIPELPSSLREIDAHYCTKLEMLSSPSSLLWSSLLKWFNPTSNEHLNCKESKMILILGNGGIPGWVLHQEIGSQVRIEPPLNWYEDDYFLGFAFFTLFRDETLHCLYGSQFSLRLRGDPDEVVDDHDISYWCNCDSFNGYTSDRLLVTLYHKNAIPNKYHRKQPWHFLADFVPRYDHINIKRCGVQLIYTHDYLHDNVPMLLDHQKGHDDAGENQADDQEPHPKRLRASNTNLKL* 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1119 961 Gene3D - 5 165 IPR027417 -
Vvi5g1119 961 Pfam C-JID domain 787 918 IPR045344 -
Vvi5g1119 961 MobiDBLite consensus disorder prediction 930 961 - -
Vvi5g1119 961 Coils Coil 434 454 - -
Vvi5g1119 961 Pfam NB-ARC domain 14 236 IPR002182 GO:0043531
Vvi5g1119 961 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 260 IPR027417 -
Vvi5g1119 961 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 8 541 IPR044974 GO:0006952
Vvi5g1119 961 Pfam Leucine Rich Repeat 499 520 IPR001611 GO:0005515
Vvi5g1119 961 PRINTS Disease resistance protein signature 201 215 - -
Vvi5g1119 961 PRINTS Disease resistance protein signature 33 48 - -
Vvi5g1119 961 PRINTS Disease resistance protein signature 110 124 - -
Vvi5g1119 961 PRINTS Disease resistance protein signature 495 511 - -
Vvi5g1119 961 Pfam Leucine Rich repeats (2 copies) 689 732 IPR025875 -
Vvi5g1119 961 SUPERFAMILY L domain-like 305 652 - -
Vvi5g1119 961 SMART LRR_CC_2 711 741 IPR006553 -
Vvi5g1119 961 SMART LRR_CC_2 497 524 IPR006553 -
Vvi5g1119 961 SMART LRR_CC_2 451 476 IPR006553 -
Vvi5g1119 961 SMART LRR_CC_2 569 596 IPR006553 -
Vvi5g1119 961 SUPERFAMILY L domain-like 610 770 - -
Vvi5g1119 961 Gene3D Ribonuclease Inhibitor 545 756 IPR032675 -
Vvi5g1119 961 Gene3D Ribonuclease Inhibitor 343 544 IPR032675 -
Vvi5g1119 961 Gene3D - 166 250 IPR042197 -
Vvi5g1119 961 MobiDBLite consensus disorder prediction 930 953 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1119 Vvi-Chr5 15948265 15951479 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1119 8 643 WRKY Transcription Factor Family AT4G12020 36.826 6.14e-102 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1119 - - vvi:104879393 1945.24