Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1092 ATGCAGTGCCTGGGTGCCATCTGTGGCGCAGGTATGGTGAAGGGGTTCCAGATACATGACTTTGAGACGCGGGGTGGTGGAATCAATGTTGTGGCTTCTGGCTACTCCAAGCTTGCTGGGCTTGGTGCTGAGATAGTGGGCACCTTTGTCCTTGTCTACACCGTTCTCTTTTGCAACTGGTGCCAAGGAAAATGCTAG 198 0.5303 MQCLGAICGAGMVKGFQIHDFETRGGGINVVASGYSKLAGLGAEIVGTFVLVYTVLFCNWCQGKC* 66
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1092 65 Gene3D Glycerol uptake facilitator protein. 1 63 IPR023271 -
Vvi5g1092 65 SUPERFAMILY Aquaporin-like 2 58 IPR023271 -
Vvi5g1092 65 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 56 IPR034294 -
Vvi5g1092 65 Pfam Major intrinsic protein 1 56 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1092 Vvi-Chr5 15338083 15338280 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1092 1 56 Major Intrinsic Protein MIP AT1G01620 73.214 1.14e-22 84.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1092 K09872 - vvi:100265390 105.531