Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1091 ATGCGTTGTTATGGATTGATCTCCGGAATTGGAAGCGAAGCTCGCTTCTCTTTCCCCGCAAACCACAGCCTTCCCACCACCCCTATCCTACCTGATTCTTGTTCTCGCCTCTCCTTCAGGCCTTTCGGCCCCATCACCGTCTCCCCCGTCCGAGCTCGGTACGCCTCCCTCAAGACCAAGGCCACCATCAACGATGAATTCCTCACTGAGCCTGAGGCTGCCGCTATGAGCTTTTATGAGCTTCTGGGCATCCCTGAATCCGGAACCTTGCTCGAAATCAAGCAGGCGTACAAGAGCTTGGCCCGGAAGTACCATCCGGACGTCTCGCCTCCGGGTCGGGTCAAGGAGTACACCAGGAGGTTTATTTGGGTGCAGGAGGCCTACGAGACGCTCTCTGATCCCCAGAGGAGAGCTTTGTATGATCGGGACTTGGCTATGGGTCTCCACTTGGCTTTCTCCGCCCGTAAAACTTACCACCGAGATGAGGGCATGGTGGCACAAAAAGAGTGGAGGAATCGGTGGGAGGGTCAGCTATCAGAGCTGAAGAGAAGAAGCATGAACAAAGATGCTGCAGCAGCCGCTGGAGCAAACATGTCATGGGGAGCCCGAATGCGCATGCAGAGGAACCAAGCAGCATCTGCTGATCTATAA 651 0.553 MRCYGLISGIGSEARFSFPANHSLPTTPILPDSCSRLSFRPFGPITVSPVRARYASLKTKATINDEFLTEPEAAAMSFYELLGIPESGTLLEIKQAYKSLARKYHPDVSPPGRVKEYTRRFIWVQEAYETLSDPQRRALYDRDLAMGLHLAFSARKTYHRDEGMVAQKEWRNRWEGQLSELKRRSMNKDAAAAAGANMSWGARMRMQRNQAASADL* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1091 216 FunFam Chaperone protein dnaJ 20, chloroplastic 61 172 - -
Vvi5g1091 216 CDD DnaJ 78 133 IPR001623 -
Vvi5g1091 216 Coils Coil 206 216 - -
Vvi5g1091 216 Gene3D DnaJ domain 64 168 IPR036869 -
Vvi5g1091 216 SUPERFAMILY Chaperone J-domain 75 152 IPR036869 -
Vvi5g1091 216 ProSiteProfiles dnaJ domain profile. 77 144 IPR001623 -
Vvi5g1091 216 PRINTS DnaJ domain signature 97 112 IPR001623 -
Vvi5g1091 216 PRINTS DnaJ domain signature 116 136 IPR001623 -
Vvi5g1091 216 PRINTS DnaJ domain signature 79 97 IPR001623 -
Vvi5g1091 216 SMART dnaj_3 76 136 IPR001623 -
Vvi5g1091 216 ProSitePatterns Nt-dnaJ domain signature. 121 140 IPR018253 -
Vvi5g1091 216 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 60 211 - -
Vvi5g1091 216 Pfam DnaJ domain 78 141 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1091 Vvi-Chr5 15301777 15303206 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1091 79 141 C2H2 Transcription Factor Family AT1G74250 42.424 1.10e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1091 - - vvi:100257288 433.335