Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vvi5g1085 | ATGGCATTTTGCAATAGATTTGGGAACCTCTTGAGACAGAGTATTTCTCAGAACAGTGCATCAAAGGGGCAGGGATCCATGGGAGCATTGCTTAATTCTATTCGTTGCATGTCATCTGCAAAGCTCTTTATTGGAGGTCTTTCATATGGAACGGATGATCAGTCTTTAAAGGATGCATTTTCAAGCTTTGGTGATGTGGTTGAAGCAAGGGTTATTACTGATAGAGACACTGGGAGGTCTAGGGGATTTGGGTTTGTGAACTTCACCAGCGACGATTCTGCCAGTTCTGCACTGTCTGCTATGGATGGCCAGGAGCTAAATGGTCGGAATATTCGTGTTAGTTATGCTAATGAAAGAACTCCAGGCCCTCGCAGTGGTGGTTCTGGAGGCGGTTTTGGTGGTGGTTATCGTGGGAATGGAGGTTATGGTGGTGGAGCTGGAGGGAATGATGGGTTCTAA | 459 | 0.4619 | MAFCNRFGNLLRQSISQNSASKGQGSMGALLNSIRCMSSAKLFIGGLSYGTDDQSLKDAFSSFGDVVEARVITDRDTGRSRGFGFVNFTSDDSASSALSAMDGQELNGRNIRVSYANERTPGPRSGGSGGGFGGGYRGNGGYGGGAGGNDGF* | 153 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vvi5g1085 | 152 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 42 | 112 | IPR000504 | GO:0003723 | |
Vvi5g1085 | 152 | PANTHER | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED | 27 | 143 | - | - | |
Vvi5g1085 | 152 | SUPERFAMILY | RNA-binding domain, RBD | 34 | 148 | IPR035979 | GO:0003676 | |
Vvi5g1085 | 152 | Gene3D | - | 12 | 150 | IPR012677 | - | |
Vvi5g1085 | 152 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 40 | 118 | IPR000504 | GO:0003723 | |
Vvi5g1085 | 152 | SMART | rrm1_1 | 41 | 114 | IPR000504 | GO:0003723 | |
Vvi5g1085 | 152 | MobiDBLite | consensus disorder prediction | 115 | 152 | - | - | |
Vvi5g1085 | 152 | FunFam | Glycine-rich RNA-binding protein 2 | 29 | 152 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vvi5g1085 | Vvi-Chr5 | 15133147 | 15135033 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vvi5g1085 | 42 | 132 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 40.659 | 1.99e-14 | 67.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vvi5g1085 | - | - | vvi:100247038 | 231.106 |