Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1085 ATGGCATTTTGCAATAGATTTGGGAACCTCTTGAGACAGAGTATTTCTCAGAACAGTGCATCAAAGGGGCAGGGATCCATGGGAGCATTGCTTAATTCTATTCGTTGCATGTCATCTGCAAAGCTCTTTATTGGAGGTCTTTCATATGGAACGGATGATCAGTCTTTAAAGGATGCATTTTCAAGCTTTGGTGATGTGGTTGAAGCAAGGGTTATTACTGATAGAGACACTGGGAGGTCTAGGGGATTTGGGTTTGTGAACTTCACCAGCGACGATTCTGCCAGTTCTGCACTGTCTGCTATGGATGGCCAGGAGCTAAATGGTCGGAATATTCGTGTTAGTTATGCTAATGAAAGAACTCCAGGCCCTCGCAGTGGTGGTTCTGGAGGCGGTTTTGGTGGTGGTTATCGTGGGAATGGAGGTTATGGTGGTGGAGCTGGAGGGAATGATGGGTTCTAA 459 0.4619 MAFCNRFGNLLRQSISQNSASKGQGSMGALLNSIRCMSSAKLFIGGLSYGTDDQSLKDAFSSFGDVVEARVITDRDTGRSRGFGFVNFTSDDSASSALSAMDGQELNGRNIRVSYANERTPGPRSGGSGGGFGGGYRGNGGYGGGAGGNDGF* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1085 152 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 42 112 IPR000504 GO:0003723
Vvi5g1085 152 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 27 143 - -
Vvi5g1085 152 SUPERFAMILY RNA-binding domain, RBD 34 148 IPR035979 GO:0003676
Vvi5g1085 152 Gene3D - 12 150 IPR012677 -
Vvi5g1085 152 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 40 118 IPR000504 GO:0003723
Vvi5g1085 152 SMART rrm1_1 41 114 IPR000504 GO:0003723
Vvi5g1085 152 MobiDBLite consensus disorder prediction 115 152 - -
Vvi5g1085 152 FunFam Glycine-rich RNA-binding protein 2 29 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1085 Vvi-Chr5 15133147 15135033 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1085 42 132 Eukaryotic Initiation Factors Gene Family AT4G34110 40.659 1.99e-14 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1085 - - vvi:100247038 231.106