Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1081 ATGGAAAAGGAGAGGTTGTTCATGAATGAAGGCAACTGCATCACTCCACCCAACTGGAATTTAGGTATGGAAATTCAATCCAATGAGCTGAATTGCTCCTCCCAAGCGGTTCAAAATTGTTTCCTGAATCCCAATTGGGACAACTCAATGGATCAGAGCGATCCCTTTGAGTCCGCCTTGAGCTCCATTGTGTCTTCTCCGGTTGGGTCCAGTGCGGGAGGCATGCCAGGGGATAGCATTGCCATCAGAGAATTGATTGGAAGACTGGGGAGCATATGCAATTCCGGGGAGATTTCGCCTCAGTCTTACATTGGAGGAGGCGGCCACGGCAACACCAACAACAGTAACAACACTTCTTGCTATAACACGCCATTGAATTCTCCTCCCAAGCTCAATCTCTCCATCATGGATCATCAGCAACATCAGATCAGGACCAATTTCCCCACTAATCATTTACCAACACATCCAAGTCTGGCACCCTTTCCAGCTGATCCCGGATTCGCCGAGAGGGCTGCGAGATTTTCCTGCTTTGGCACTGGGAATTTCTCAGGCCTAAGTGCCCAATTCGGCCTCAATGATACTGAACTGCCATATAGATCATCTACTGGTAAGCTCTCCAGAGTCTCCAGTAACCAGTCCTTCAAGGCTGCTGGATCTCAACTGGGTGCTCAAGAATTCAAGGACAGGTCGCCGCCCCAGGATGGAGTTTCAGCTTCTGATAAGAAATTGGGTAAAATTTCAAGGTCTTCTACCCCAGATAATACAGAATTGGGAGATTCCCGCGAGGAATCTTCGGTTTCTGAGCAGATCCCAGGTGGGGAAACCAGCCTAAAAGGCCAGAATGATGCCAATGGAAGAAAAAGAAAATCGATTCCCAGAGGCAAAGCCAAGGAAGTCCCTTCATCCCCCTCTGCCAAAGATGCGAAGGTTGCCTCAGACAAGGATGAATCGAATGCCAAGAGAAGCAAACCAGATGAAGGTAGTGGGAGCGAAAAGGATGCTGCCAAAGCGAAGGCAGAGGCAAATGGGAGTACCAAATCTGCAGGGGATGGGAATCAAAAACAAAGCAAGGATAATCCTAAGCCGCCGGAGGCTCCAAAGGACTACATCCATGTTAGAGCCAGAAGGGGTCAAGCTACTGATAGCCATAGTCTTGCTGAAAGAGTCCGAAGAGAGAAAATCAGTGAGAGAATGAAGTTCCTTCAAGATCTTGTACCGGGCTGCAATAAGGTGACTGGGAAAGCAGTTATGCTGGACGAAATTATAAACTATGTGCAATCCTTGCAGCGTCAGGTTGAGTTTCTCTCTATGAAGTTGGCAACTGTGAATCCAAGGATGGATTTCAACATGGAAGCTCTTCTGTCCAAGGAAATCTTTCAATCGCGGGGATCATTGCCACAAGCCATGTACCCATTGGATTCCTCAGCTCTAGCATTTCCCTACGGATACCAGCCCCAACAAGGACCATCTCTACAGAATGGGATTCCTAATGGAACAGAGACCCCCTTCTCGGTGAACCCTTTAAATTCTGCGATACGACGCACCTCAAGCATGCTGCCTTCCATTGATGGGTTTGGTGAAGCTGCCTCTCAGGTTTCTACGTTTTGGGAGGACGAACTCCATAGCGTTGTTCAGATGGGAATAGGCCAGAATCAGCCCCAGGGCTTTCCTGGGTCAATGGGTGCAGCCCAGATGAAAATTGAGTTATGA 1710 0.4842 MEKERLFMNEGNCITPPNWNLGMEIQSNELNCSSQAVQNCFLNPNWDNSMDQSDPFESALSSIVSSPVGSSAGGMPGDSIAIRELIGRLGSICNSGEISPQSYIGGGGHGNTNNSNNTSCYNTPLNSPPKLNLSIMDHQQHQIRTNFPTNHLPTHPSLAPFPADPGFAERAARFSCFGTGNFSGLSAQFGLNDTELPYRSSTGKLSRVSSNQSFKAAGSQLGAQEFKDRSPPQDGVSASDKKLGKISRSSTPDNTELGDSREESSVSEQIPGGETSLKGQNDANGRKRKSIPRGKAKEVPSSPSAKDAKVASDKDESNAKRSKPDEGSGSEKDAAKAKAEANGSTKSAGDGNQKQSKDNPKPPEAPKDYIHVRARRGQATDSHSLAERVRREKISERMKFLQDLVPGCNKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMDFNMEALLSKEIFQSRGSLPQAMYPLDSSALAFPYGYQPQQGPSLQNGIPNGTETPFSVNPLNSAIRRTSSMLPSIDGFGEAASQVSTFWEDELHSVVQMGIGQNQPQGFPGSMGAAQMKIEL* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1081 569 FunFam Basic helix-loop-helix transcription factor 375 448 - -
Vvi5g1081 569 MobiDBLite consensus disorder prediction 199 219 - -
Vvi5g1081 569 MobiDBLite consensus disorder prediction 308 339 - -
Vvi5g1081 569 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 376 448 IPR036638 GO:0046983
Vvi5g1081 569 CDD bHLH_AtBPE_like 368 453 - -
Vvi5g1081 569 SMART finulus 384 434 IPR011598 GO:0046983
Vvi5g1081 569 MobiDBLite consensus disorder prediction 264 280 - -
Vvi5g1081 569 MobiDBLite consensus disorder prediction 345 359 - -
Vvi5g1081 569 Pfam Helix-loop-helix DNA-binding domain 382 429 IPR011598 GO:0046983
Vvi5g1081 569 MobiDBLite consensus disorder prediction 199 367 - -
Vvi5g1081 569 Gene3D - 375 449 IPR036638 GO:0046983
Vvi5g1081 569 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 265 487 IPR024097 GO:0006355
Vvi5g1081 569 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 378 428 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1081 Vvi-Chr5 15017411 15019767 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1081 1 536 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 40.214 1.55e-85 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi5g1081 HLH 8.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1081 - - vvi:100259005 1087.02