Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1074 ATGGACGGAGGTCCGGCAGGCGGGGGCGGCGTCGGCGGCGGAGCCACCGGTCCCGCGCCTTTCCTTCTCAAGACCTATGAAATGGTGGACGACTCATCGACCGATGAAATCGTGTCCTGGAGCTCCACCAAGAGCAGTTTCGTTGTCTGGAATCCGCCTGAATTCGCTCGCGTTCTTCTCCCCATGTATTTCAAGCACAATAACTTTTCCAGCTTCATCAGACAGCTCAATACATATATGGCAACGGAGTTATTGAAAGTGGTTGATTACGACTTGCCTTTGAACAACTAG 291 0.5258 MDGGPAGGGGVGGGATGPAPFLLKTYEMVDDSSTDEIVSWSSTKSSFVVWNPPEFARVLLPMYFKHNNFSSFIRQLNTYMATELLKVVDYDLPLNN* 97
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1074 96 PRINTS Heat shock factor (HSF) domain signature 59 71 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi5g1074 96 PRINTS Heat shock factor (HSF) domain signature 21 44 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi5g1074 96 PRINTS Heat shock factor (HSF) domain signature 72 84 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi5g1074 96 Pfam HSF-type DNA-binding 21 80 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vvi5g1074 96 Gene3D - 15 91 IPR036388 -
Vvi5g1074 96 FunFam Heat stress transcription factor B-4 14 90 - -
Vvi5g1074 96 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 15 80 IPR027725 -
Vvi5g1074 96 SUPERFAMILY "Winged helix" DNA-binding domain 16 82 IPR036390 -
Vvi5g1074 96 SMART hsfneu3 17 91 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1074 Vvi-Chr5 14874277 14874842 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1074 12 79 HSF AT1G46264 69.118 3.87e-30 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vvi5g1074 HSF_DNA-bind 9.3e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1074 K09419 - vvi:100267444 147.517