Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1056 ATGGAGGATCAATTCCCTAAGATGCAAACCTTCTTGAGAAAGGAATTGCCATCGTATTTTCAGGGGCCAGTGGGTTCGAGATTCTTTGGAGATGCCACCATCTGGGATGGCCTAGCTGAAAGCGCATCTTGCAACCATGTCACTGGCAGCAACGTGAAACTATCATCGTCATCACCTGATAGTTTGTTTTCAAGCTCCGAATCTACTTCTTCAGTGGATGAGGCTTCTGCTTCCAATTTAGTGAAGAACATGCCAGAATTCACTAGAGAAGATCCCCTGCAAACGCAGCATGGTGTTCCATTTTTCTCCGGATCTAATTCTGTGAACCTGAGTGGGGCTTCAAGTACTTCAGATGTCAATCAAAGGTTCATTCCTGAACCTTCTACTGTCGTCATAGATCCATCAACACAAATTGCCAACTCGCTTGGCAGGAATGAAAAGTGTGAGCCCATGTCATCATGTCCTTTATTCCCCACACCCCAGCTGAGCCAAAGCCAGCATCTTCCCGGATTTGAATGGCTCAAAATAAATCAAAGCCTTGCAAACCATCCCTCAAAAGGTCTGAGTGACTACTGGCTCAGCACTACCAAGACACAGCCCATGAAATACACGGGAAGAAGAATGCTGAATCACCAACAGAAAACTTCGCTGTCGTCCTCAGCATCGTCTCCGGGAAAGTTGTTTCGAGGGGTGAGGCAAAGACACTGGGGCAAGTGGGTTGCTGAGATAAGGTTACCGAGAAACAGGACCAGGGTTTGGTTGGGAACTTTTGATACTGCTCAAGAGGCTGCTTTTGCATACGATACAGCGGCCTACATTCTAAGAGGAGACTATGCGCATTTGAATTTCCCAGAGCTAAAGCATCAGCTTAAGGCCAATTCTACAAATGGAACCACGGCAGCCCTTCTTGAAGCAAAGTTACAAGCCATATCCAAAGGCATTTCAGCTCACAAAGAGCCCATTGCTCCTCCACCACCGCCATCACCAAAGCAGCACTACTTGCCTTACGACAATTCAAAAGTAGCGAAAGCAGTGAGCCAAAACCCCACAAGTAAGGAGTGGCAGCTTGAGTTGGAGTACAAAATTGCCCATGAGATTGTTGAGAACAAGAAAATCCAGGAGGTAGTATTGGACATGGACGGAGTTCAGTTAAGTAGAATGCCCTCCTTGGACATGGACGCAATCTGGGATGCCATTCTAGTCTCTGACTCATGA 1215 0.4683 MEDQFPKMQTFLRKELPSYFQGPVGSRFFGDATIWDGLAESASCNHVTGSNVKLSSSSPDSLFSSSESTSSVDEASASNLVKNMPEFTREDPLQTQHGVPFFSGSNSVNLSGASSTSDVNQRFIPEPSTVVIDPSTQIANSLGRNEKCEPMSSCPLFPTPQLSQSQHLPGFEWLKINQSLANHPSKGLSDYWLSTTKTQPMKYTGRRMLNHQQKTSLSSSASSPGKLFRGVRQRHWGKWVAEIRLPRNRTRVWLGTFDTAQEAAFAYDTAAYILRGDYAHLNFPELKHQLKANSTNGTTAALLEAKLQAISKGISAHKEPIAPPPPPSPKQHYLPYDNSKVAKAVSQNPTSKEWQLELEYKIAHEIVENKKIQEVVLDMDGVQLSRMPSLDMDAIWDAILVSDS* 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1056 404 Pfam AP2 domain 228 275 IPR001471 GO:0003700|GO:0006355
Vvi5g1056 404 Gene3D AP2/ERF domain 227 285 IPR036955 GO:0003700|GO:0006355
Vvi5g1056 404 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 67 399 - -
Vvi5g1056 404 CDD AP2 226 286 IPR001471 GO:0003700|GO:0006355
Vvi5g1056 404 SUPERFAMILY DNA-binding domain 227 284 IPR016177 GO:0003677
Vvi5g1056 404 FunFam Ethylene-responsive transcription factor 2 226 285 - -
Vvi5g1056 404 PRINTS Ethylene responsive element binding protein signature 250 266 IPR001471 GO:0003700|GO:0006355
Vvi5g1056 404 PRINTS Ethylene responsive element binding protein signature 228 239 IPR001471 GO:0003700|GO:0006355
Vvi5g1056 404 SMART rav1_2 227 290 IPR001471 GO:0003700|GO:0006355
Vvi5g1056 404 MobiDBLite consensus disorder prediction 55 77 - -
Vvi5g1056 404 ProSiteProfiles AP2/ERF domain profile. 227 284 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1056 Vvi-Chr5 14296242 14297570 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1056 172 399 AP2-EREBP Transcription Factor Family AT4G13620 50.435 3.02e-70 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi5g1056 AP2 5.4e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1056 - - vvi:100255447 739.184