Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1055 ATGATGGGTGAACAGGGAAAGACAGAGGAAGGTGGTGGTGGTGGTGGGGGTGGGAAGGAGTTGGGAATGACATCACAGTCTTCTGCAAATCAGAGCCCATCTCTCAGGAATGAAACAGTCTCAAACTATCATCCATATCCACCACCACTTGCAAAATACGAAGATATCGTTTCCAGTCCAAAACTTTTCATGGGCACTTTGGAGAAGCTCCATGCAGTAATGGGAACCAAGTTCATGATACCAATTATAGGGGGAAAGGAGCTAGATCTGCATCGGCTTTTTGTGGAGGTAACCTCTCGTGGTGGTTTGGAGAAGATCATTAGAGAAAGGAGATGGAAAGAAGTGACTGCTGTTTTCAGCTTTCCCTCCACTGCTACAAATGCCTCTTTTGTACTGCGCAAGTATTATGTTTCATTGCTTCACCACTATGAACAAATTTACTTCTTTAAAGCTCAGGGTTGGGCACCTATCTCTGCTGATGCTTCACAGAGTCCATCTATAACACCAGTTCCATCTCATGGATTGGCTGAACCAGTTTTGCCATCACCTGAAAGTCAACCGGCTGGCATCCAACAGCAGAGGATAAGTTCTGCCGATATATTTCCTGGAGCAAGTCCGGCTTCATCAACAGCTTCTCCAGTGATAGGGGTCATCGATGGGAAATTTGAAAGTGGTTATCTTGTCACTGTAACTATTGGCACCGAGAAGCTAAAAGGTGTTCTTTATGAAGCTCCGCAGACCCCGGCCCGTCAAGTGCCACAGTACTTCAGTGTCATCACCAACAATACTGAGAGTACCCCTGCAGCACCAACTGTGCATCGTCGCCGCCGCAGGAAGAAATCTGAGATAAAGAAGAGAGATCCTGCTCATCCTAAACCTAACAGAAGTGGGTATAATTTCTTCTTTGCAGAGCAGCACGCCAGACTGAAGCCTCTGCACCCAGGGAAAGACAGGGAAATCAGTAGAATGATTGGTGAATTGTGGACCAAACTAAAAGAAAATGAGAAGGCTGTTTATCAGGAGAAAGCTGTTAAAGACAAAGAGAGGTACAGAGTGGAGATGGAAGATTACCGGGAGAGATTGAAGATGGGTCAAATCATCAGTGATGCAGTGCCCATACAGCAACGGCTTCCCCATGCTGATGTAGATATGGTGGAAGCAGAAGCAAAGACTGAAATGGAAGGAGGGGAATCTCCACAAACTCCAGAGAATGAGAGTAGCTCAGGGAAAACTGATTCTGATGATGATGACAAGACAGCAGAGAAGGAGTTTGATATGGAGACATATCCAGGTGTAGGAGTAGGAGTAGAAGGTGGTGAATGTAGCAATGTGGTGGTGGTGGGTATGGAGACATCGGTGGAGGAAGAGACATACGAGTCAGGGAAGAGGGTTGAGAAGGTTGGAGTTGAAAGTGAAGAAAGCCTAGAGAATGCCATGGAGAAAGAGAAATAA 1452 0.4607 MMGEQGKTEEGGGGGGGGKELGMTSQSSANQSPSLRNETVSNYHPYPPPLAKYEDIVSSPKLFMGTLEKLHAVMGTKFMIPIIGGKELDLHRLFVEVTSRGGLEKIIRERRWKEVTAVFSFPSTATNASFVLRKYYVSLLHHYEQIYFFKAQGWAPISADASQSPSITPVPSHGLAEPVLPSPESQPAGIQQQRISSADIFPGASPASSTASPVIGVIDGKFESGYLVTVTIGTEKLKGVLYEAPQTPARQVPQYFSVITNNTESTPAAPTVHRRRRRKKSEIKKRDPAHPKPNRSGYNFFFAEQHARLKPLHPGKDREISRMIGELWTKLKENEKAVYQEKAVKDKERYRVEMEDYRERLKMGQIISDAVPIQQRLPHADVDMVEAEAKTEMEGGESPQTPENESSSGKTDSDDDDKTAEKEFDMETYPGVGVGVEGGECSNVVVVGMETSVEEETYESGKRVEKVGVESEESLENAMEKEK* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1055 483 Gene3D - 49 160 IPR036431 GO:0003677
Vvi5g1055 483 SUPERFAMILY HMG-box 283 361 IPR036910 -
Vvi5g1055 483 FunFam High mobility group B protein 15 51 164 - -
Vvi5g1055 483 Gene3D High mobility group box domain 274 368 IPR036910 -
Vvi5g1055 483 MobiDBLite consensus disorder prediction 452 483 - -
Vvi5g1055 483 Pfam HMG (high mobility group) box 291 358 IPR009071 -
Vvi5g1055 483 ProSiteProfiles ARID domain profile. 57 148 IPR001606 GO:0003677
Vvi5g1055 483 SMART ARID_2 54 144 - -
Vvi5g1055 483 MobiDBLite consensus disorder prediction 21 41 - -
Vvi5g1055 483 FunFam High mobility group B protein 15 273 368 - -
Vvi5g1055 483 SMART bright_3 58 149 IPR001606 GO:0003677
Vvi5g1055 483 SMART hmgende2 290 359 IPR009071 -
Vvi5g1055 483 MobiDBLite consensus disorder prediction 263 297 - -
Vvi5g1055 483 CDD ARID_HMGB9-like 59 144 IPR045303 GO:0003677
Vvi5g1055 483 MobiDBLite consensus disorder prediction 408 425 - -
Vvi5g1055 483 MobiDBLite consensus disorder prediction 166 193 - -
Vvi5g1055 483 Pfam ARID/BRIGHT DNA binding domain 61 144 IPR001606 GO:0003677
Vvi5g1055 483 MobiDBLite consensus disorder prediction 1 41 - -
Vvi5g1055 483 MobiDBLite consensus disorder prediction 455 483 - -
Vvi5g1055 483 CDD HMG-box_AtHMGB9-like 291 357 - -
Vvi5g1055 483 MobiDBLite consensus disorder prediction 388 438 - -
Vvi5g1055 483 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 291 358 IPR009071 -
Vvi5g1055 483 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 27 412 - -
Vvi5g1055 483 SUPERFAMILY ARID-like 57 158 IPR036431 GO:0003677
Vvi5g1055 483 Coils Coil 340 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1055 Vvi-Chr5 14282921 14291181 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1055 49 388 ARID Transcription Factor Family AT1G04880 63.610 1.13e-137 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vvi5g1055 ARID 1.9e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1055 - - vvi:100260501 888.256