Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1050 ATGGAAGGCGTGCACGTTTCTGACAAGGTCGTTGCTGGGAACAACCCCAGGATATTCAGTTTCTCCGAGCTCTATATAGGGTCCAACGGATTCTGTGAGGATGAGGTTCTTGGAAGTGGAGGCTTTGGGAAAGTTTTTAGAGCAGTTCTGCCCAGTGACGGGACGGTGGTCGCGGTGAAGTGCGTGGCGGAGAAGGGAGAGCCGTTTGAGAAAACTTTTGTGGCAGAATTGGTGGCGGTGGCTCAGCTGCGCCACCGTAATCTGGTTAGGTTGAGGGGATGGTGTGTTCATGAAGAGCAGTTGCTCCTTGTGTATGATTACATGCCCAATCGCAGCCTCGATAGGATACTTTTCCGGAGACCAGAGAATTCACTACTTCTTGGCTGGGAGAGGCGGAGGAGAATAGTTGGAGGCTTGGCCGCTGCACTTTATTATCTCCACGAGCAGTTGGAAACTCAGATCATACACCGGGATGTGAAGACCAGCAACGTGATGCTTGACTCCCATTACAATGCCCGGCTGGGTGACTTTGGACTGGCTCGGTGGCTGGAACACGAAATTGAAATTGAAACCAAGACCAATTCAATAAGGCATCATCAGTTTCGGTTGGCAGAGACCACCAGAATTGGTGGCACAATCGGGTATTTGCCCCCAGAGAGCTTCCAAAAGCGAAGCATGACCACTGCAAAATCTGATGTCTTCAGCTTTGGAATCGTAGTGTTGGAGGTGGTTACGGGACGGCGGGCAGTGGATCTCACATATCCAGATGATCAAATCATTTTGCTTGATTGGATCCGACGGCTGTCCGATGAGGGGAAGCTTTTACAGGTAGGGGATAATAGATTGCCAGACGGTTCTTACAGGCTATCTGACATGGAGCGTCTAATTCATCTGGGCCTCCTCTGCACACTCCACAACCCCCACTCACGACCCAACATGAAATGGATTGTAGAAACACTTTCTTCCCAATCTTCCACCAGGCTTCCTGCTCTCCCATCATTTCAATCCCACCCTTTGTATATCTCTTTATCTTCCCCAACCACAGGAGAAACCATATATGCCACAGCAGAAAATGGAAGAATTACCGAAACAAACTCTTCCAACAGCAGCCGCCGCCAGCAAAGCAGTATTTTCCCCATGGTCCAAACTCCACAAGAGATATCCTACAAGGAAATTGCCTCTGCAACAAATAATTTCTCAGAATCTCAGAGGGCGGCAGAATTGGACTTTGGAACTGCCTATCATGGCTTCCTTGACAACGGTCACCATGTTCTGGTGAAGCGGCTTGGCATGAAGACGTGCCCAGCACTGCGGGCACGTTTCTCAAATGAACTCCAGAACTTGGGGAGGCTCCGCCACCGGAACCTGGTACAGCTCCATGGATGGTGCACTGAGCAAGGAGAGATGCTTGTTGTCTATGATTACTTGTCAAATCGCCTACTGAGCCACCTCCTTTTCCACCTAGATAACAAGAAAGTCCATTCCACCCTGCATTGGCGTCACAGATACAACATTATCAAATCGCTAGCTTCCGCCATTCTTTATCTCCATGAGGAATGGGATGAACAAGTTATCCACAGAAACATTACCTCTTCTGCCATTATCATTGATGCTGACATGAATCCAAGGCTCAGTTCCTTTGCCCTAGCGGAATTCTTGACACGAAATGAGCATGGTCATCATCAAGTCACCGACCCAACCAGATCAGTCAGGGGGATTTTTGGTTACATGTCACCAGAGTATATGGAATCCGGAGAAGCAACTCCAATGGCTGATGTTTATAGCTTTGGCATGGTGGTGCTTGAAGTGGTTACCGGACAGATGGCAGTAGATTTCCGATGGCCTGGCGTGTTACTGGTGAAGAGGGTTCGTGAATTGGCTGAAAGGAAAAAGCCACTGGAGGAAATGGCTGATTGGAGGTTAGATGGAGAGCATGATCAAGAGGAACTGGTGAGACTGATTAAACTAGGAATGGCATGCACACGCTCCAAACCAGAATTAAGACCCAGTATGGGGCAGATTGTAAGCATACTTGATGGCAATGATAAATTCTTTATGGAAGAAAGGCAAAACAAGGAGAGAAGAGAAGAATGGAAACAAAGAAATGCTTGTTCTTTGTCGTTGATCAAGAGAATCCAGGCCCTAGGAATACAATAG 2157 0.4817 MEGVHVSDKVVAGNNPRIFSFSELYIGSNGFCEDEVLGSGGFGKVFRAVLPSDGTVVAVKCVAEKGEPFEKTFVAELVAVAQLRHRNLVRLRGWCVHEEQLLLVYDYMPNRSLDRILFRRPENSLLLGWERRRRIVGGLAAALYYLHEQLETQIIHRDVKTSNVMLDSHYNARLGDFGLARWLEHEIEIETKTNSIRHHQFRLAETTRIGGTIGYLPPESFQKRSMTTAKSDVFSFGIVVLEVVTGRRAVDLTYPDDQIILLDWIRRLSDEGKLLQVGDNRLPDGSYRLSDMERLIHLGLLCTLHNPHSRPNMKWIVETLSSQSSTRLPALPSFQSHPLYISLSSPTTGETIYATAENGRITETNSSNSSRRQQSSIFPMVQTPQEISYKEIASATNNFSESQRAAELDFGTAYHGFLDNGHHVLVKRLGMKTCPALRARFSNELQNLGRLRHRNLVQLHGWCTEQGEMLVVYDYLSNRLLSHLLFHLDNKKVHSTLHWRHRYNIIKSLASAILYLHEEWDEQVIHRNITSSAIIIDADMNPRLSSFALAEFLTRNEHGHHQVTDPTRSVRGIFGYMSPEYMESGEATPMADVYSFGMVVLEVVTGQMAVDFRWPGVLLVKRVRELAERKKPLEEMADWRLDGEHDQEELVRLIKLGMACTRSKPELRPSMGQIVSILDGNDKFFMEERQNKERREEWKQRNACSLSLIKRIQALGIQ* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1050 718 CDD STKc_IRAK 410 680 - -
Vvi5g1050 718 Gene3D Phosphorylase Kinase; domain 1 4 107 - -
Vvi5g1050 718 Gene3D Phosphorylase Kinase; domain 1 359 475 - -
Vvi5g1050 718 Gene3D Transferase(Phosphotransferase) domain 1 477 705 - -
Vvi5g1050 718 FunFam Receptor like protein kinase S.2 477 703 - -
Vvi5g1050 718 SMART serkin_6 31 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g1050 718 SUPERFAMILY Protein kinase-like (PK-like) 372 678 IPR011009 -
Vvi5g1050 718 FunFam Receptor like protein kinase S.2 361 475 - -
Vvi5g1050 718 SUPERFAMILY Protein kinase-like (PK-like) 15 325 IPR011009 -
Vvi5g1050 718 ProSiteProfiles Protein kinase domain profile. 399 685 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g1050 718 PANTHER - 14 323 - -
Vvi5g1050 718 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672|GO:0006468
Vvi5g1050 718 Gene3D Transferase(Phosphotransferase) domain 1 108 329 - -
Vvi5g1050 718 Pfam Protein kinase domain 33 256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g1050 718 ProSitePatterns Protein kinases ATP-binding region signature. 37 60 IPR017441 GO:0005524
Vvi5g1050 718 ProSiteProfiles Protein kinase domain profile. 31 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi5g1050 718 FunFam Receptor like protein kinase S.2 4 107 - -
Vvi5g1050 718 FunFam Receptor like protein kinase S.2 108 326 - -
Vvi5g1050 718 Pfam Protein tyrosine and serine/threonine kinase 409 678 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1050 Vvi-Chr5 14152439 14154685 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1050 389 681 Receptor kinase-like Gene Family AT3G53810 38.255 1.04e-53 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vvi5g1050 PK_Tyr_Ser-Thr 5.9e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1050 - - vvi:100257175 1423.68