Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi5g1048 ATGCCTTTTGCCTTGTTAATCTCATTTCCCACATATCAACACCCAAACCATCCATTTGAAGCAGCCGTTTCTCCTCTCTTCGACACTTTTCGGGGCTCCCAGCCCCGAAAATCTTCGACTTTTAACTTCCTGGTCTCTCATTTTCTCCGCGAAATGTACTCTGCAATTCATTCCCTTCCGCTCGACGGAGGCGTCGCCCACGCCGACTTCCAGGGCTCTCTCGACGGCACCAATCTGCCCGGCGATGCTTGCTTGGTTCTCACCACCGATCCCAAGCCCCGCCTCCGCTGGACCGCCGAGCTCCACGAGCGATTTGTTGATGCTGTTACTCAACTCGGTGGCCCCGATAAAGCAACTCCAAAGACCATCATGAGAACAATGGGGGTAAAAGGCCTCACCCTTTATCATTTGAAGTCGCATCTTCAGAAATACCGGTTGGGGAAGCAATCATGCAAGGAGTTAACTGACAACTGTAAGGAGGCATCTTGCATTGCAGAGAGTCAAGACACTGGTTCATCTTCAACATCATCATCAAGAATGATACCTCAAGACTTGAATGATGGTTATCAGGTTACTGAGGCTTTGCGTGTTCAAATGGAAGTTCAAAGAAGACTGCATGAACAGCTGGAGGTTCAGCGCCATCTTCAACTTAGGATTGAAGCACAAGGCAAATACCTGCAGTCAATACTTGAGAAAGCCTGCAAAGCTCTCAAAGATCAGGCTGCAGCAACTGCAGGGCTTGAAGCTGCTAGGGAAGAGCTCTCTGAACTACAGATCAAGGTCTCCAATGATTGTGAAGGGATGAACCCACTTGAGACCATAAAAATGCCTTGTCTATCTGAAATTGCAGCAGCTCTAGAAAACAAAAATGCAGTGAATGTCCCAGCCAGAATTGGTGACTGCTCTGTGGACAGCTGCTTGACGTCAAGTGGGAGCCCAATTTCTCCAATGGGTGCAAGTTCACGGGGTGCAGTGATGAAAAAGAGGTCAAGGCCCTTGTTTACTGGTGGAAGCTCCTTGGCTTTGGAGAACAACATGCGGCAAGACGTAGAGTGGATGATGACCAATATGGGATGA 1077 0.4884 MPFALLISFPTYQHPNHPFEAAVSPLFDTFRGSQPRKSSTFNFLVSHFLREMYSAIHSLPLDGGVAHADFQGSLDGTNLPGDACLVLTTDPKPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRLGKQSCKELTDNCKEASCIAESQDTGSSSTSSSRMIPQDLNDGYQVTEALRVQMEVQRRLHEQLEVQRHLQLRIEAQGKYLQSILEKACKALKDQAAATAGLEAAREELSELQIKVSNDCEGMNPLETIKMPCLSEIAAALENKNAVNVPARIGDCSVDSCLTSSGSPISPMGASSRGAVMKKRSRPLFTGGSSLALENNMRQDVEWMMTNMG* 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi5g1048 358 FunFam Myb family transcription factor 91 149 - -
Vvi5g1048 358 NCBIfam myb-like DNA-binding domain, SHAQKYF class 92 147 IPR006447 GO:0003677
Vvi5g1048 358 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 75 317 IPR044848 GO:0003700
Vvi5g1048 358 SUPERFAMILY Homeodomain-like 91 149 IPR009057 -
Vvi5g1048 358 Coils Coil 240 260 - -
Vvi5g1048 358 Pfam Myb-like DNA-binding domain 95 145 IPR001005 -
Vvi5g1048 358 Pfam MYB-CC type transfactor, LHEQLE motif 190 236 IPR025756 -
Vvi5g1048 358 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 89 149 IPR017930 -
Vvi5g1048 358 Gene3D - 91 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi5g1048 Vvi-Chr5 14128826 14143566 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi5g1048 52 331 G2-like Transcription Factor Family AT3G24120 71.034 5.17e-139 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vvi5g1048 Myb_DNA-binding 2.3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi5g1048 - - vvi:100250267 697.582